Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32872g00001 AAAATGTCAACAACTTCACAGAAGAGTGGAGGAACTGCAAGCTTCATTTCTTCAACGAATCTTGGACGGTTCTTCACTTTCCAAGAAATCCTAGACGCAACCAACAAATTTGATGAGAAGCTTCTTCTTGGTGTTGGTGGTTTCGGCAGGGTTTATAGGGGAATCCTTGATGATGGTACCACTGTAGCTGTTAAAAGGGGAAATCCAAGATCTGAACAAGGTCTTGCTGAATTCAGAACGGAAATTGAGATGTTATCAAAGCTTCGCCATCGTCATCTTGTGTCTCTAATTGGTTATTGTGATGAGAGGTCAGAAATGATTCTTGTCTATGAATATATGGCTAATGGTCCCCTCAGGAGTCATTTGTATGGAACTGATCTACCACCTCTATCGTGGAAACAACGACTCGATATTTGCATCGGAGCAGCAAGAGGACTTCATTATCTCCACACTGGTGCATCGCAAAGCATAATTCATCGAGATGTAAAGACAACAAACATCCTTTTAGATGATAGCTTTGTTGCTAAAGTTGCTGACTTTGGCCTCTCCAAAACCGGTCCCGCGCTTGATCAGACTCACGTGAGCACGGCTGTTAAAGGTAGTTTCGGTTATCTTGATCCAGAATACTTTAGAAGGCAACAACTCACAGAGAAATCAGATGTTTATTCATTCGGAGTAGTTTTAATGGAAGTGCTATGCACAAGACCGGCTTTGAACCCTGTCCTTCCTAGGGAACAGGTTAATATAGCCGAGTGGGCGATGAATTGGCAGAAGAAGGGAATGCTCGATCAAATCATGGATCAACAACTTGTCGGGAAGGTCAATCCTGCTTCCCTCAAGAAGTTCGGGGAGACAGCGGAGAAGTGTTTGGCTGAGTATGGAGTGGATAGACCATCTATGGGAGATGTTTTATGGAATCTTGAATATGCTTTGCAGCTCCAAGAAACCTCATCAGCACTCATGGAACCAGAAGATAACAGTACGAATCACATTACTGGAATTCAGTTGACACGTCTTGAGAATTTTGATAACAGTGTGAGTATGGTTGATGGAAGCAACTCTGTCACGGACGTAGATGCAGAAGACGCTGCTACAAGTGCAGTGTTCTCGCAGTTG 1116 0.4346 KMSTTSQKSGGTASFISSTNLGRFFTFQEILDATNKFDEKLLLGVGGFGRVYRGILDDGTTVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDSFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMNWQKKGMLDQIMDQQLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTRLENFDNSVSMVDGSNSVTDVDAEDAATSAVFSQL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32872g00001 372 PANTHER OS07G0166700 PROTEIN 24 314 IPR045272 GO:0004714|GO:0006468
Trme32872g00001 372 Gene3D Transferase(Phosphotransferase) domain 1 113 333 - -
Trme32872g00001 372 SMART serkin_6 37 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32872g00001 372 CDD STKc_IRAK 43 308 - -
Trme32872g00001 372 FunFam Receptor-like protein kinase FERONIA 113 329 - -
Trme32872g00001 372 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524
Trme32872g00001 372 Gene3D Phosphorylase Kinase; domain 1 2 112 - -
Trme32872g00001 372 ProSiteProfiles Protein kinase domain profile. 37 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32872g00001 372 FunFam receptor-like protein kinase FERONIA 1 112 - -
Trme32872g00001 372 SUPERFAMILY Protein kinase-like (PK-like) 14 308 IPR011009 -
Trme32872g00001 372 Pfam Protein tyrosine and serine/threonine kinase 42 304 IPR001245 GO:0004672|GO:0006468
Trme32872g00001 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32872g00001 Trme-Chr32872 19 1134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32872g00001 3 372 Receptor kinase-like Gene Family AT3G46290 67.639 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme32872g00001 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32872g00001 - - gmx:100817192 691.419