Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme328622g00001 TTGGAATTTCCTGTCAAGAATGCAGTTATTACTGTACCTGCTTATTTTAATGATTCTCAGCGAAAAGCAACCGTAGATGCTGGCGCCATTGCTGGCCTTAATGTTATGCGGATAATCAATGAGCCCACTGCTGCAGCTATTGCATATGGCCTTGACAAGAAAATTAACTGTGTGGGGGAGCGAAACATTTTCATCTTTGACTTGGGTGGTGGGACTTTTGACGTGTCTCTCCTTACAATTAAGGATAAGGTCTTCCTAGTTAAGGCTTGCGCCGGAAACACTCATCTTGGAGGAGAGGACTTTGATAATAGAATGGTGAACTACTTTGCAC 331 0.432 MEFPVKNAVITVPAYFNDSQRKATVDAGAIAGLNVMRIINEPTAAAIAYGLDKKINCVGERNIFIFDLGGGTFDVSLLTIKDKVFLVKACAGNTHLGGEDFDNRMVNYFA 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme328622g00001 110 PANTHER HEAT SHOCK PROTEIN 70KDA 6 110 IPR013126 GO:0005524|GO:0140662
Trme328622g00001 110 Gene3D - 1 62 - -
Trme328622g00001 110 FunFam Endoplasmic reticulum chaperone BiP 1 63 - -
Trme328622g00001 110 Pfam Hsp70 protein 4 110 IPR013126 GO:0005524|GO:0140662
Trme328622g00001 110 Gene3D - 63 110 - -
Trme328622g00001 110 PRINTS 70kDa heat shock protein signature 8 28 - -
Trme328622g00001 110 PRINTS 70kDa heat shock protein signature 71 81 - -
Trme328622g00001 110 ProSitePatterns Heat shock hsp70 proteins family signature 2. 65 78 IPR018181 -
Trme328622g00001 110 SUPERFAMILY Actin-like ATPase domain 4 109 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme328622g00001 Trme-Chr328622 1 331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme328622g00001 4 109 Calmodulin-binding Proteins AT3G12580 82.075 8.76e-58 186