Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32854g00001 ATGGGTGGTTCGAAGCCAGTAAATGATACAGGGTCATCATCTCAGACAGTCAGAAGTCATCGACATACGGTGCTTTCTATTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGATGCTTCTCGTCTATTGGTTACGTTGGTACAAATCACGCATCCTCTATTCATCTTATGTGGAGCAAGATTGTGAATTTGGTATCGGTCATTTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCACTTCAAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGTCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTTAAAGATCCTAATTATACCGGAGAAGTGCAGTTTCAAACCGAAGTTGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCGTTCATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGGT 516 0.407 MGGSKPVNDTGSSSQTVRSHRHTVLSIVIGFSCTFVISVMLLVYWLRWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQIATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32854g00001 172 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Trme32854g00001 172 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 67 170 - -
Trme32854g00001 172 Pfam Protein kinase domain 86 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32854g00001 172 FunFam Somatic embryogenesis receptor kinase 1 54 160 - -
Trme32854g00001 172 ProSitePatterns Protein kinases ATP-binding region signature. 91 113 IPR017441 GO:0005524
Trme32854g00001 172 SUPERFAMILY Protein kinase-like (PK-like) 68 171 IPR011009 -
Trme32854g00001 172 Gene3D Phosphorylase Kinase; domain 1 55 160 - -
Trme32854g00001 172 ProSiteProfiles Protein kinase domain profile. 85 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32854g00001 Trme-Chr32854 1 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32854g00001 4 171 Receptor kinase-like Gene Family AT5G45780 68.047 4.45e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme32854g00001 Pkinase 4.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32854g00001 - - ccaj:109812711 310.071