Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32831g00001 GGTCTTTCTGAAGAAGAAGTCAGAGCTGCTGCTGCTTGTGCCGGAGAGGAAGTGATGATTAGGAATCGTTTTATGGAGATGAATGCTCCTAGAGACAGTTCATCCGTCAACAAGTATTACAACCTCGCACATGCGGTGAATGAAATGGTCATAAGACCACCATCCCTATTGCGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTGTCTTTGTACAACAACAAATTAAACGGAATTTTGGCAGACGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGCCCACATCTCATAATAGTTCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATATAAGTGGTTACCATCTGTATCGTGCATTTTTTATGCTGGAGGGAAGGATTATCGAACAAAATTATTTCATCAAGTAAGTGTGCCTTAG 480 0.4125 GLSEEEVRAAAACAGEEVMIRNRFMEMNAPRDSSSVNKYYNLAHAVNEMVIRPPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRTKLFHQVSVP 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32831g00001 159 PANTHER SNF2/RAD54 HELICASE FAMILY 33 155 - -
Trme32831g00001 159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 155 IPR027417 -
Trme32831g00001 159 Gene3D - 31 158 IPR038718 -
Trme32831g00001 159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 159 IPR014001 -
Trme32831g00001 159 Pfam SNF2-related domain 65 149 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32831g00001 Trme-Chr32831 54 1089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32831g00001 3 130 RAD5 or RAD16-like Gene Family AT3G16600 26.950 4.39e-08 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme32831g00001 SNF2_N 6.6e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32831g00001 K11647 - zju:107404055 293.893