Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3280g00001 ATGGAGTGGAACGCGAAATCTCCCGGGCAATGGGACTGGGAAAACTTGTTCTTCTTGAATTCAAAGGCAACAGAAAATCACAGGTTACAGTCTACTGATTGGAGTGCGGAGACAGACCGAGAAATCAATGTCGGGGTTTTGTTTCCGTCAGGTGGTAATGGTTATTCCATGTCGAAACTAGCACACGGTTCATCCTCGAGGAGCTCAAAATCTCCTTCCAATAATTCATCATCAAATGGAGACAGCAAGACATCTATGTTAACTCAAGAAGGTTCTCAAGACGATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCAATTGAAACTTCTCCAGCAGCTGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTGCCCTGAAACTCATTCCAAGAAAGCCTCTTCCTCTGCAGTTCCGCTTTCGTGCAAAAAGAAAGGTAAGTCGAAAAGTCCGAACTTACTACAGCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCTTCTGCTAAAGATTACCATCGAAAACATCGTGTTTGTGAAAGTCATACCAAATCACCTATGGTGGTTGTAGCTGGTTTAGAGCTTCGATTTTGCCAGCAATGTAGCAGGTTCCATTCTGTGTCAGAGTTTGATGATAAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTGCAACTGAATCCATCAGCTTTGCATTCTTCACCCTATGATCGGAGGCAAATAATGGGCTCGTTCGATTTTTCAAGGAATGCTACAATTTTACCATGGCAAGGCATACAAAGTAGCAAGCTCCCCCAAACAAAAGATTTTATGCTCAAACCTCCAAAAGCCTTCAACAAGAATGTCACTATGCTTTCTGATGATTCCAATGGCCATCTTGCATCCAAAGGCACAGGATCCAAGAGTACATTTCCAGGTATAGAAGATCAAGCTACCTTGTCTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCAAACGATACCAAGTCCCTCTCCCTCGATCACACCAACCGAACAACCGGTACCACTCAGTCTATAACACATACAATTGCTCAGCGCTCTCCATTTCCGTCATCCGAATACTGGCACACTGATCAGCAACATGCCAACTCTAGTACCTGTATCTCGTTCTCAGGTTACGACAATAGCAGTCGCTTTCAAGACTTTCAACTTTTCAATGCACCCTTTGAGTCAAGTTTCCCTTGCAACCAGCTGGATTAA 1314 0.4437 MEWNAKSPGQWDWENLFFLNSKATENHRLQSTDWSAETDREINVGVLFPSGGNGYSMSKLAHGSSSRSSKSPSNNSSSNGDSKTSMLTQEGSQDDSTGKKELSKGDPIETSPAAEPLLTLKLGKRFYFEDVCPETHSKKASSSAVPLSCKKKGKSKSPNLLQPSCQVEGCGLDLSSAKDYHRKHRVCESHTKSPMVVVAGLELRFCQQCSRFHSVSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNPSALHSSPYDRRQIMGSFDFSRNATILPWQGIQSSKLPQTKDFMLKPPKAFNKNVTMLSDDSNGHLASKGTGSKSTFPGIEDQATLSDPNATQDVNRALSLLSTNSWGANDTKSLSLDHTNRTTGTTQSITHTIAQRSPFPSSEYWHTDQQHANSSTCISFSGYDNSSRFQDFQLFNAPFESSFPCNQLD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3280g00001 437 MobiDBLite consensus disorder prediction 57 115 - -
Trme3280g00001 437 FunFam Squamosa promoter-binding-like protein 14 156 226 - -
Trme3280g00001 437 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
Trme3280g00001 437 Gene3D - 161 226 IPR036893 GO:0003677|GO:0005634
Trme3280g00001 437 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Trme3280g00001 437 MobiDBLite consensus disorder prediction 57 93 - -
Trme3280g00001 437 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 375 IPR044817 GO:0003677
Trme3280g00001 437 MobiDBLite consensus disorder prediction 309 337 - -
Trme3280g00001 437 Pfam SBP domain 165 238 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3280g00001 Trme-Chr3280 322 2118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3280g00001 1 424 SBP-box Gene Family AT5G43270 38.022 9.07e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme3280g00001 SBP 4.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3280g00001 - - mtr:11441057 682.559