Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3278g00001 ATGGATTTTTATCAAGAGAATCTTGCTCACATTAACAATGACTTTGAGTTACATGATTTCATTGATGATCCAAACTTTGATCAATTCATCAATTTAATTCGTGGAGAGGAGAATGAAGATACTACTATTTGTAACTTCAATTCTGATCTCATTAATCCAAGTTTTGTTGATAACTCATTCCTTTCATTTCCTTCAAACCCATTTGATCACAACATAAATAACTCTGTTACCCCTTTTGATCCAACTTCTTCACTTAACTCTTTCTCTTGTTTTGATGGAGAAACTAAGGGAGAAAGAGGAGAAGAAAATGATGGAGATAATTACTCATCTCCAACAACAACTACAAGTGTTGATACTAAGCCACGGTCGAAAACCGATAGATCCAAGACTTTGGTTTCTGAGCGGAGGAGGCGAAGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTAGTTCCCAACATAACTAAG 471 0.3588 MDFYQENLAHINNDFELHDFIDDPNFDQFINLIRGEENEDTTICNFNSDLINPSFVDNSFLSFPSNPFDHNINNSVTPFDPTSSLNSFSCFDGETKGERGEENDGDNYSSPTTTTSVDTKPRSKTDRSKTLVSERRRRSRMKDKLYALRSLVPNITK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3278g00001 157 MobiDBLite consensus disorder prediction 120 145 - -
Trme3278g00001 157 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 157 IPR011598 GO:0046983
Trme3278g00001 157 MobiDBLite consensus disorder prediction 90 145 - -
Trme3278g00001 157 Gene3D - 115 157 IPR036638 GO:0046983
Trme3278g00001 157 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 157 - -
Trme3278g00001 157 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3278g00001 Trme-Chr3278 54 524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3278g00001 13 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.359 2.27e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme3278g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3278g00001 K26214 - gmx:100805451 187.578