Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme325g00001 ATGGACATGAATTCAAATAATACTCCCGTTCTCACGGATACCGCTCCGATAACAAATTCAAGGCTGCATGTGCATTCCAATTTGTTGCCTTATTCCCATACCGGTGCAACCTTTCCTCATGGTATGCTATTGAATATCCCAAGGAAGAAGACGGGAATTCTTGAAGATGTTTTTTCTTGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCACCGAAGAATAAAACAAAGGATGTTAATCACGGATTTGCATCATCTGAAGCTGATCCTTACTTCAACTGGCTGCTAAAGTATCCGTCGGCACTTACATCTTTTGATCAAATTACGAACTACGCTAAAGGCAAAAGAATTGCATTGTTTTTGGACTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCGGATAATATGCGAGCTGCTGTTAAAAAAGTGGCAGAGTATTTTCCAACAGCGATAATTAGCGGAAGAAGTCGCGACAAGGTACATGAATTTGTAGGACTAACCGAACTCTATTATGCTGGTAGCCATGGAATGGACATCATTGGCCCTGTTAGACAATCTCTATCTGTATCACATAACCACCCTAATTGCATCATTAAGTCTACTGACAAGCAGGGGAAGAAGGTGAATTTATTCCAACCTGCTGCTGAATTCCTGCCAATGATTAATGAGGTGCTTAAGTCTCTTATTGAGTGTACAAAAGACATCAAAGGATCAAAAGTTGAGAACAATAAATTTTGTGTATCTGTACATTACCGCAATGTAGACGAGAAGAGTTGGAGTTTGGTGGCGCAACGAGTTAATGATGTTCTTAAGGGCTTTCCACGTTTGCGTTTAACTCATGGTCGCAAGGTTTTAGAGGTCCGACCTGTGATTAACTGGGATAAGGGAAAAGCCGTCACATTTTTACTCGAGTCACTTGGACTTAACAATTGTGACGATGTGCTTCCTATATATATTGGCGATGATCGGACGGATGAAGATGCATTTAAGGTTCTGAGAGAGGGAAATAAAGGTTATGGGATTTTAGTGTCTTCAGCACCGAAAGAAAGTAGTGCAAGTTACTCTCTCCGTGATCCGTCGGAGGAAACCTCTTGTGGTAGCAACATTAACTATTGCTATCTGCTAGTTTTGCTCAAAGCTCCAGTG 1170 0.412 MDMNSNNTPVLTDTAPITNSRLHVHSNLLPYSHTGATFPHGMLLNIPRKKTGILEDVFSCGWLDAMKSSSPPPKNKTKDVNHGFASSEADPYFNWLLKYPSALTSFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSLSVSHNHPNCIIKSTDKQGKKVNLFQPAAEFLPMINEVLKSLIECTKDIKGSKVENNKFCVSVHYRNVDEKSWSLVAQRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESSASYSLRDPSEETSCGSNINYCYLLVLLKAPV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme325g00001 390 FunFam Trehalose 6-phosphate phosphatase 222 298 - -
Trme325g00001 390 CDD HAD_TPP 119 370 - -
Trme325g00001 390 Gene3D - 120 364 IPR023214 -
Trme325g00001 390 Gene3D - 201 298 - -
Trme325g00001 390 FunFam Trehalose 6-phosphate phosphatase 228 377 - -
Trme325g00001 390 NCBIfam HAD-IIB family hydrolase 120 341 IPR006379 -
Trme325g00001 390 NCBIfam trehalose-phosphatase 218 369 IPR003337 GO:0003824|GO:0005992
Trme325g00001 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 370 IPR044651 GO:0004805|GO:0005992
Trme325g00001 390 SUPERFAMILY HAD-like 119 369 IPR036412 -
Trme325g00001 390 FunFam Trehalose 6-phosphate phosphatase 118 206 - -
Trme325g00001 390 Pfam Trehalose-phosphatase 121 368 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme325g00001 Trme-Chr325 159 2792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme325g00001 112 338 Trehalose Biosynthesis Gene Families AT1G70290 27.004 2.05e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme325g00001 K01087 - gmx:100819495 634.795