Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme325866g00001 CTGCAGGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGACGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCGTTGATAAGTGGTTGAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAAGACCTAACAGGATTGAGGTCTGGAGAAGATGCCACCCAAACAACGGGATGA 201 0.4577 MQVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDLTGLRSGEDATQTTG 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme325866g00001 66 Pfam Ring finger domain 3 45 IPR001841 -
Trme325866g00001 66 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 54 IPR013083 -
Trme325866g00001 66 SUPERFAMILY RING/U-box 3 51 - -
Trme325866g00001 66 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 3 48 - -
Trme325866g00001 66 SMART ring_2 4 44 IPR001841 -
Trme325866g00001 66 ProSiteProfiles Zinc finger RING-type profile. 4 45 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme325866g00001 Trme-Chr325866 2 202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme325866g00001 4 50 C3H Transcription Factor Family AT1G80400 74.468 1.75e-23 89.0