Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32565g00001 ACCTCAAGCTACACTGCAAATCTTTCATCATTGCTTACTGTCCCAAAATTGAGGTCTGATAGAAACATTGAATGGCTTAAACAAAACAATCTACCGATTGGTTGTGCTAGCACCAGTGCCTTTGTGAAGAACTACTTGATCCAAGTATATAATTTCCCTAGGCACCAAATTGTCGATGTTGAGGATGAACGTGACTCTATTGTTAAATTCAAGAACAAAAAAATTTCTGCTATCTTTGCYGAGAGCCCATATGTGAARGTTTTCTTGAATAAACACTGCAAAGATTACACTGCAACTACAGCAGCCTATAAATTTGGAGGTTTGGGATTTGTATTTCAAAAAGGAGCTCCAATAGAAAAAGACTTTTCTGAAGCAATTTTAACATTAGCAGAAAATGGAAAACTCAAAGCTTTGGAAGACAAATGGTTAACACCTTCCAATCAATGCTCAAACAACTCACCATCTCCACAAACTGAGAGTCTGACTCTTAATAAATTTTGGGGAATCTATTTAATATGTGCTGCCACTTCCACCATCTGCTTATTACTAGCTTCATTGAAGAAGTACTTATATAAAAGAAATGTAATCGCAGAATATGATGATAATAAAGGTAATCAAAATTGGACTGGACTGGATCGGCCGGTTCAACCGGTTGAATTTGGAACTGAATTTGCATCCGGTCCGATCAACACTTCAAACCGCTATGCATCCGGTCCAATCAGCACTTCAAACCGCTATGCATCCGGTCCGATCAACACTTNNNNNNNNNNANNNAACACTTCAAACCGCTATGATACAGAACTCGGTATCAAACCAGTATGA 822 0.3747 TSSYTANLSSLLTVPKLRSDRNIEWLKQNNLPIGCASTSAFVKNYLIQVYNFPRHQIVDVEDERDSIVKFKNKKISAIFAESPYVKVFLNKHCKDYTATTAAYKFGGLGFVFQKGAPIEKDFSEAILTLAENGKLKALEDKWLTPSNQCSNNSPSPQTESLTLNKFWGIYLICAATSTICLLLASLKKYLYKRNVIAEYDDNKGNQNWTGLDRPVQPVEFGTEFASGPINTSNRYASGPISTSNRYASGPINTXXXXXNTSNRYDTELGIKPV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32565g00001 273 Gene3D - 35 147 - -
Trme32565g00001 273 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 206 IPR015683 -
Trme32565g00001 273 SUPERFAMILY Periplasmic binding protein-like II 3 149 - -
Trme32565g00001 273 Pfam Ligand-gated ion channel 1 175 IPR001320 GO:0015276|GO:0016020
Trme32565g00001 273 Pfam Bacterial extracellular solute-binding proteins, family 3 20 144 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32565g00001 Trme-Chr32565 3 960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32565g00001 2 193 Ion Channels AT1G42540 34.673 5.61e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32565g00001 - - mtr:11441834 293.508