Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3255g00001 ATGTTTGCAAGAATTTGGCCTTGGCATGGAAATGTACTGGACCTGGAGCCATCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGATCAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGC 292 0.4178 MFARIWPWHGNVLDLEPSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAK 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3255g00001 97 Gene3D - 15 97 IPR012677 -
Trme3255g00001 97 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Trme3255g00001 97 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Trme3255g00001 97 SMART rrm1_1 22 94 IPR000504 GO:0003723
Trme3255g00001 97 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 97 IPR000504 GO:0003723
Trme3255g00001 97 PANTHER TRANSFORMER-2-RELATED 21 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3255g00001 Trme-Chr3255 1 802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3255g00001 15 97 Eukaryotic Initiation Factors Gene Family AT1G22760 36.471 4.02e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3255g00001 K13161 - gmx:100790907 154.836