Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme325528g00001 TTTGATCTTGAGGATTTACTAAAGGCTTCAGCTGAAGTTCTTGGAAAAGGGAGCTATGGTACAGCCTACAAGGCTGTTTTGGAGGAAGGAGTGACAATGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTAGGAAAGAAGGAATTTGAGCAACAGTTGGATATTGTTGGGAGAATCGGACGCCATCCCAATGTCATGCCTCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTTTGGTTTACAGTTACATGCCAGGAGGCAGCTTGTTTTTCTTGTTGCATGGTGAGTTTTTCTAA 297 0.4141 FDLEDLLKASAEVLGKGSYGTAYKAVLEEGVTMVVKRLKEVVVGKKEFEQQLDIVGRIGRHPNVMPLRAYYYSKDEKLLVYSYMPGGSLFFLLHGEFF 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme325528g00001 98 ProSiteProfiles Protein kinase domain profile. 8 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme325528g00001 98 PANTHER OS05G0588300 PROTEIN 1 95 - -
Trme325528g00001 98 FunFam pollen receptor-like kinase 1 1 83 - -
Trme325528g00001 98 Pfam Protein kinase domain 11 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme325528g00001 98 ProSitePatterns Protein kinases ATP-binding region signature. 14 45 IPR017441 GO:0005524
Trme325528g00001 98 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Trme325528g00001 98 SUPERFAMILY Protein kinase-like (PK-like) 12 97 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme325528g00001 Trme-Chr325528 1 297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme325528g00001 1 95 Receptor kinase-like Gene Family AT5G58300 75.789 4.07e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme325528g00001 Pkinase 1.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme325528g00001 - - gmx:100813074 182.57