Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32550g00001 CTGATATCAAATTGGTGTGAGGCAAATGGAGTGGAACCACCTAGAACTAGAAGGGTAGGAAACTTCTGGATCTGTAAGGAAACCTCAGACGGCTCTTCTGAATTAATAAATCTTGATACTTTGATAAGGAAACTTACTTCCAGTTACATTGAGGATCAGCGTTTTGCAGCAGGAGAGCTCCGTATTCTTGCTAAACACACTGATCAAAATCGAAATTTGATCGGTGAAGCTGGTGCTATACCCCTCCTTGTCGATCTCCTCTACACTCCTGATGCTGGCACCCANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGTATGCAAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTAAAGCGGATGAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTGCTCTCTTCTGCGAAGGAAGTCCAAGAGGAAAGCTCGATGCTGCAACAGCACTATTCAAACTGTGTTTAATCCATGGGAACAAAGGGCG 587 0.368 MISNWCEANGVEPPRTRRVGNFWICKETSDGSSELINLDTLIRKLTSSYIEDQRFAAGELRILAKHTDQNRNLIGEAGAIPLLVDLLYTPDAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMQARENAAATFFSLSKADENKVAIGASGAIKALVALFCEGSPRGKLDAATALFKLCLIHGNKGR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32550g00001 196 Gene3D - 16 97 IPR011989 -
Trme32550g00001 196 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 78 161 IPR000225 GO:0005515
Trme32550g00001 196 Gene3D - 127 195 IPR011989 -
Trme32550g00001 196 PANTHER U BOX DOMAIN-CONTAINING 132 196 - -
Trme32550g00001 196 Pfam Armadillo/beta-catenin-like repeat 68 93 IPR000225 GO:0005515
Trme32550g00001 196 Pfam Armadillo/beta-catenin-like repeat 150 188 IPR000225 GO:0005515
Trme32550g00001 196 Coils Coil 132 136 - -
Trme32550g00001 196 SUPERFAMILY ARM repeat 38 190 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32550g00001 Trme-Chr32550 160 1139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32550g00001 1 196 U-box Gene Family AT3G46510 45.050 2.13e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32550g00001 - - tpra:123888033 292.352