Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme325330g00001 GGTCTTGCTAAGCTTCTGCATTCTGACCATAGCTATGTCACGACTCGAGTCATGGGGACATTTGGTTATGTTGCGCCTGAGTATGCCTGCACTGGAATGCTGACCGAGAGGAGTGACGTGTATAGCTTTGGGATACTCATCATGGAACTAATCACCGGAAGAAGTCCTGTTGATTATAGC 180 0.4778 GLAKLLHSDHSYVTTRVMGTFGYVAPEYACTGMLTERSDVYSFGILIMELITGRSPVDYS 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme325330g00001 60 SUPERFAMILY Protein kinase-like (PK-like) 1 58 IPR011009 -
Trme325330g00001 60 Pfam Protein kinase domain 1 58 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme325330g00001 60 Gene3D Transferase(Phosphotransferase) domain 1 1 60 - -
Trme325330g00001 60 ProSiteProfiles Protein kinase domain profile. 1 60 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme325330g00001 60 PANTHER OS01G0323000 PROTEIN 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme325330g00001 Trme-Chr325330 1 334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme325330g00001 1 60 Trihelix Transcription Factor Family AT1G26150 66.667 2.39e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme325330g00001 Pkinase 3.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme325330g00001 - - gmx:100305432 119.012