Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32506g00001 AAAAGAATCATGAGTTGTTTCAGCTGTTGCGAAGAGGATGAGTTCCACAAGACTGCTGAAAGTGGCGGACCGTATGTTGTAAAAAATCCAGCAGTCTCCAAGGTTTTAAAAAACGGTCCGTTACCGCGAAAATGGCCGCGACAAAACGGTATAGGGAATGATGGAAATTATCATGCCTCCGAGACTGCAAAACAGGGAGCTCAAACTGTTAAAGTGCAGCCCATTGAAGTTCCTGAGATACAGGCAGATGAACTGAAAGAAGTAACAGATAACTTTGGACAAGATTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGAGTTCTTAAAAGTGGGCAGGCGGCAGCAATCAAGAAGCTGAAACACGATAATTTTGTCCAGTTGCTTGGATATTGCATTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCACGACATTTTACATGGTATATGA 480 0.4229 KRIMSCFSCCEEDEFHKTAESGGPYVVKNPAVSKVLKNGPLPRKWPRQNGIGNDGNYHASETAKQGAQTVKVQPIEVPEIQADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAIKKLKHDNFVQLLGYCIDGNSRILAYEFASNGSLHDILHGI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32506g00001 159 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Trme32506g00001 159 Gene3D Phosphorylase Kinase; domain 1 53 119 - -
Trme32506g00001 159 SUPERFAMILY Protein kinase-like (PK-like) 68 158 IPR011009 -
Trme32506g00001 159 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 7 158 - -
Trme32506g00001 159 Gene3D Transferase(Phosphotransferase) domain 1 120 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32506g00001 Trme-Chr32506 60 1067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32506g00001 50 157 Receptor kinase-like Gene Family AT4G39400 37.500 7.42e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trme32506g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32506g00001 K13436 - gmx:100808383 226.868