Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32491g00001 ATGGTTGGTTCATTCGGTTATAGTGCTCCCGAGTTTGCANTATCAGGAGTATACACCGTAAAAAGCGATGTTTACAGCTTTGGAGTGGTTATGCTGGAACTTTTAACTGGTCGTAAGCCACTTGACAGTTCGAGAGTTAGAGCTGAGCAATCACTTGTGAGGTGGGCTACACCGCAGCTTCATGATATAGATGCATTGTCCAAAATGGTTGATCCTTGTTTGAATGGCATGTATCCTGCAAAATCGTTGTCACGCTTCGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCGGAATTTCGACCACCAATGTCCGAGTTGGTGCAAGCATTGGTACG 338 0.4586 MVGSFGYSAPEFAXSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRAEQSLVRWATPQLHDIDALSKMVDPCLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSELVQALVR 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32491g00001 113 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32491g00001 113 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
Trme32491g00001 113 Pfam Protein tyrosine and serine/threonine kinase 7 111 IPR001245 GO:0004672|GO:0006468
Trme32491g00001 113 SUPERFAMILY Protein kinase-like (PK-like) 1 109 IPR011009 -
Trme32491g00001 113 PANTHER OS01G0253100 PROTEIN 1 112 - -
Trme32491g00001 113 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32491g00001 Trme-Chr32491 45 824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32491g00001 1 113 Strubbelig Receptor Gene Family AT4G22130 92.035 9.82e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme32491g00001 PK_Tyr_Ser-Thr 3.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32491g00001 - - sly:101245221 218.394