Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3248g00001 ATGAACGACGGAACATTCCGTGGAGGCGCACTTGCATTCAAACTTGATACACTACTAAAATTGTCTGATGTAAAAGGAGTAGATGGAAAAATCACACTCTTACACTTTGTTGTTCAAGAGATAATCCGAACCGAAGGAATAAGAGCAGCTCGAAATATGAGAGAGAGTGCTAGTTTCTCTAGTATAAAAACTGATGACCTTCTCGAAGACATTAATCAAGAATCAGAAGAACACTACCGCGAAATGGGTCTTCAAGTTGTTTCGCGTTTAAGCACTGATCTTGAGAATGTGAAGAAAGCAGCAGCATTAGATGCTGATGCTTTAACAGGAACAACNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGAGAAGAAAATCATGGCTCTTGTGAAGAGTACTGGTGATTACTTTCATGGGAGTACAGGGAGAGATGAAGGGTTGAGATTGTTTGTAATAGTACGCGATTTCTTAATAATGTTGGATAGAGTTTGCAAAGAGATTCAAAAGGCACCGGCAACAAAGCCAGCACCAAAGAATGCGAAACAAGAAGCGGAAACAAAGAATGTGAAACAAGAAACAAAGAATGTGAAAGAAGAAAGTGAAAAAAAGAATGTGAAACAAGAAAGTGAAACAAAGAATGTGAAACAAGATACTGCTGGATCTAGAGGACCACCACCACCACCAACCACGAAAACTCGTCCTCCACCGCCTGATATTCGGCAAAAATTGTTTCCGGCAGTGGTAGATAGGAGAGTGGATGATTTTAGTTCAGATGAAGACAGTCCATAG 906 0.3366 MNDGTFRGGALAFKLDTLLKLSDVKGVDGKITLLHFVVQEIIRTEGIRAARNMRESASFSSIKTDDLLEDINQESEEHYREMGLQVVSRLSTDLENVKKAAALDADALTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKKIMALVKSTGDYFHGSTGRDEGLRLFVIVRDFLIMLDRVCKEIQKAPATKPAPKNAKQEAETKNVKQETKNVKEESEKKNVKQESETKNVKQDTAGSRGPPPPPTTKTRPPPPDIRQKLFPAVVDRRVDDFSSDEDSP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3248g00001 301 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 225 IPR015425 -
Trme3248g00001 301 MobiDBLite consensus disorder prediction 283 301 - -
Trme3248g00001 301 Gene3D Formin, FH2 domain 1 115 IPR042201 -
Trme3248g00001 301 Gene3D Formin, FH2 domain 156 262 IPR042201 -
Trme3248g00001 301 MobiDBLite consensus disorder prediction 213 301 - -
Trme3248g00001 301 MobiDBLite consensus disorder prediction 260 280 - -
Trme3248g00001 301 Pfam Formin Homology 2 Domain 1 111 IPR015425 -
Trme3248g00001 301 Coils Coil 218 256 - -
Trme3248g00001 301 MobiDBLite consensus disorder prediction 219 254 - -
Trme3248g00001 301 Coils Coil 162 164 - -
Trme3248g00001 301 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1 222 - -
Trme3248g00001 301 PANTHER FORMIN-RELATED 161 211 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3248g00001 Trme-Chr3248 1206 2111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3248g00001 1 292 FH2 protein (formin) Gene Family AT5G54650 48.464 1.03e-68 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3248g00001 - - lja:Lj0g3v0108189.1 270.011