Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme324821g00001 ATGAGACCCTCAAAGAATAAGGCTAAGCCGGGGGAGAGTACTCGACCACGACCAAAAGATCGGCAGCAGATCCAAGACTGTATTAAAGAGTTGAGAGGAATCATTCCTCATGGCGGAAAGTGTAGCATTGATTCTTTGTTAGACCGCACGATCAGATACATGCTTTTCTTACGCGGC 177 0.4689 MRPSKNKAKPGESTRPRPKDRQQIQDCIKELRGIIPHGGKCSIDSLLDRTIRYMLFLRG 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme324821g00001 59 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 58 IPR036638 GO:0046983
Trme324821g00001 59 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 57 IPR011598 GO:0046983
Trme324821g00001 59 MobiDBLite consensus disorder prediction 1 23 - -
Trme324821g00001 59 Pfam Helix-loop-helix DNA-binding domain 21 57 IPR011598 GO:0046983
Trme324821g00001 59 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 3 58 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme324821g00001 Trme-Chr324821 1 267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme324821g00001 3 58 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 72.414 2.97e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme324821g00001 - - cam:101509177 116.316