Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32445g00001 ATGTTTGTTTTAACATCAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCCTTGCCTCCTGTCGGCAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCTTCCATGCAAAAGCAGACTGACTTCATACCGAGTTACCCTAACCTTCCTTCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCATGTAGACCTTCTGGTCAGTACTGCTTCGGTTTCTCTCGGTTCACCAACCGATCTGTCTGCTTGGGACATGGCTGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGATTTTGGTCTCAAACAAAACCGTCAACCTACGGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTTTTCAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATTTGCATGACAATACGTGGGCATTTAGACATATTTATCGGG 598 0.4482 MFVLTSGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHVDLLVSTASVSLGSPTDLSAWDMAADPETDEVYAQMTLQPVNKYDKEAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRHIYR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32445g00001 199 CDD B3_DNA 141 199 IPR003340 GO:0003677
Trme32445g00001 199 Gene3D - 139 199 IPR015300 -
Trme32445g00001 199 SUPERFAMILY DNA-binding pseudobarrel domain 132 199 IPR015300 -
Trme32445g00001 199 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 199 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32445g00001 Trme-Chr32445 11 1103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32445g00001 7 199 B3 DNA Binding Superfamily AT1G19220 79.793 4.51e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme32445g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32445g00001 K14486 - gmx:100805456 320.857