Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3237g00001 ATGAATAGCATCAACATTGATCAGAAGCACAGACACGACATTCCCCGCCATCAAGTCAAACATGTGATATGTTCACTTTGTGGAACTGAACAAGAGGTTCAGCAGAATTGTGTCAATTGTGGTGTGTGTATGGGCAAGTACTTCTGCGAGACGTGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACTGGCGGATGTGAGAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTTCTCAACTTTGTTGAAAAACGGTCACCCTTGCGTGGAAGGAGCAATGCATCACGATTGTCCTATTTGTTTTGAGTATTTGTTTGAATCTGTTAACGATGTCAGCGTGTTGCATTGCGGACATACAATCCATAAGAGTTGTCTGAATGAAATGAGGGAACATTTTCAGTATGCATGCCCTTTGTGCTCAAAGTCGGTTTGTGATATGTCGAAGGTTTGGGAAAAAATTGACTTGGAAATTGCTGCTACACCGATGCCTGAACCATATCTTAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTGAAAATTCTCACGCCAAGTTCCATCTTGTTGCACAAAAGTGTTTGAACTGCAAATCTTACAACACAAGACAAACAAGAAGCTGA 657 0.4125 MNSINIDQKHRHDIPRHQVKHVICSLCGTEQEVQQNCVNCGVCMGKYFCETCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCFSTLLKNGHPCVEGAMHHDCPICFEYLFESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLEIAATPMPEPYLNKMVWILCNDCGENSHAKFHLVAQKCLNCKSYNTRQTRS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3237g00001 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 180 IPR013083 -
Trme3237g00001 218 SUPERFAMILY RING/U-box 107 155 - -
Trme3237g00001 218 Pfam Ring finger domain 108 151 IPR001841 -
Trme3237g00001 218 Pfam Zinc-ribbon 156 214 IPR039512 -
Trme3237g00001 218 ProSiteProfiles Zinc finger RING-type profile. 109 152 IPR001841 -
Trme3237g00001 218 SMART ring_2 109 151 IPR001841 -
Trme3237g00001 218 Pfam CHY zinc finger 8 54 IPR008913 GO:0008270
Trme3237g00001 218 Gene3D - 181 218 - -
Trme3237g00001 218 SUPERFAMILY Zinc hairpin stack 45 102 IPR037275 -
Trme3237g00001 218 ProSiteProfiles Zinc finger CHY-type profile. 1 42 IPR008913 GO:0008270
Trme3237g00001 218 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 217 - -
Trme3237g00001 218 SUPERFAMILY CHY zinc finger-like 7 44 IPR037274 GO:0008270
Trme3237g00001 218 ProSiteProfiles Zinc finger CTCHY-type profile. 44 108 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3237g00001 Trme-Chr3237 400 2381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3237g00001 7 218 C2H2 Transcription Factor Family AT3G18290 39.450 5.89e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3237g00001 K10144 - gmx:100812023 450.669