Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32304g00001 ATGACAAGAGGTTTCAAGGAGAAGTTGGGAGAAGGAGGCTTTGGCACTGTGTTCAAGGGGAACCTACGCAGCGGCCCTTGCGTAGCGATCAAGATGTTGGGCAAGTCAAAAGGACATGGACAGGATTTTATTAGTGAAGTCGCAACTATTGGAAGAATACATCATTTGAATGTGGTACAGTTACTTGGATTTTGTATCGAGGGATCACAACGCGCACTTATTTATGAATACATGGATAATGGATCTCTTGATAAATTTATTTTCTCCAAAGAAGGGAGCATGAATTTAAGCTGCAAACAAGTTTATGATATTTCAATTGGAGTAGCTCGCGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATTAAGCCCCACAATATCCTGCTTGATGAGAATTTTATCCCTAAGATATCTGACTTTGGGTTGGCAAAGCTACATCCGATAGACAATAGCATTGTCACAATGACCGGAATAAGAGGTACAATTGGATATATGGCTCCAGAATTGTTTTACAAAAATATCGGGGGAGTGTCTTATAAAGCTGATGTTTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGCAAGAGGAAAAACCTAAATTCCAATGCAGAGCATTCAAGCCAGATGTAT 651 0.3978 MTRGFKEKLGEGGFGTVFKGNLRSGPCVAIKMLGKSKGHGQDFISEVATIGRIHHLNVVQLLGFCIEGSQRALIYEYMDNGSLDKFIFSKEGSMNLSCKQVYDISIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKISDFGLAKLHPIDNSIVTMTGIRGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNSNAEHSSQMY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32304g00001 217 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Trme32304g00001 217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Trme32304g00001 217 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Trme32304g00001 217 SUPERFAMILY Protein kinase-like (PK-like) 6 207 IPR011009 -
Trme32304g00001 217 SMART serkin_6 3 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32304g00001 217 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 216 IPR045874 GO:0004672
Trme32304g00001 217 ProSiteProfiles Protein kinase domain profile. 3 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32304g00001 217 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme32304g00001 217 FunFam Os07g0541700 protein 78 167 - -
Trme32304g00001 217 Gene3D Transferase(Phosphotransferase) domain 1 78 217 - -
Trme32304g00001 217 Pfam Protein tyrosine and serine/threonine kinase 5 205 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32304g00001 Trme-Chr32304 1 651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32304g00001 1 217 Receptor kinase-like Gene Family AT4G18250 55.656 1.95e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme32304g00001 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32304g00001 - - tpra:123893257 406.757