Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3229g00001 ATGTCCCCAGTCACCGTAGTGCTTGGAGACGGTATTTATCTTCTCGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACTGCCGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCCAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTGCTTCCTGAGATGGTTGATAGAGTGGCCAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCGCTCAGTCTGAAAGATCCTGAAAAATATGAGTTTCGTCCAAAGCATTTGCTTAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGTGACACAAATTCCATCTTCCCGTCTGCCATATCAAAGGATGGCCGATCATACAATGATCAGTTATTTAGCTCTGCTGCAGACGTCCTTCGTAGAATTGGTGAGGATGGAAGAATTATACAGGAATTTATTCAGCTCGGTGCTAAGGCCAAAGTTGCTGCTTCAGAGGCCATGGATGCTGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTGGATCCAATTCAATATACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGACCACGGTTGATCGTCCTGTCATCCAGAGGCATCTTCTCAGTGATAGTACTGATCCATTCAACCGTTCTCATCTGACCGCCGATATGCTGATTCCTGATGTTGAACTCAAAGCAAGAATTGAAGAGTTTATCAGGTCTCAGGAAATGAAGAAACACAGTGAAAGCCTAAGCATGCAAAGTAATAAGGCCACCATTCAACCCACAAATGCTGATATGTTGATAGATTAG 921 0.4311 MSPVTVVLGDGIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRTTVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDVELKARIEEFIRSQEMKKHSESLSMQSNKATIQPTNADMLID 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3229g00001 306 SUPERFAMILY RING/U-box 200 279 - -
Trme3229g00001 306 ProSiteProfiles U-box domain profile. 207 281 IPR003613 GO:0004842|GO:0016567
Trme3229g00001 306 SMART Ubox_2 211 274 IPR003613 GO:0004842|GO:0016567
Trme3229g00001 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 287 IPR013083 -
Trme3229g00001 306 PANTHER UBIQUITINATION FACTOR E4 6 284 IPR045132 GO:0000151|GO:0030433|GO:0034450
Trme3229g00001 306 Pfam Ubiquitin elongating factor core 6 191 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Trme3229g00001 306 Pfam U-box domain 208 279 IPR003613 GO:0004842|GO:0016567
Trme3229g00001 306 CDD RING-Ubox_UBE4A 210 278 - -
Trme3229g00001 306 FunFam Ubiquitin conjugation factor e4 a 207 285 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3229g00001 4 306 U-box Gene Family AT5G15400 79.208 3.14e-172 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3229g00001 K10597 - gmx:100806175 536.184