Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32240g00001 TCTCCATTTTTTCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGAACAGCATGGTTTATGAAGCTAGTGCAAGAATTAGAGACCCTGTATATGGATGTGCAGGTACAATATGTCACCTCCAAAAGCAAGTCAATGAACTTCAAGCACAATTAGCTAAGTCACAAGCTGAACTTATTAACATGCAATTGCAACAATCCAATCTACTATCTCTTATTTGCATGGAAATGAAAGAAACTCCAAATGAATCATCACCACAAGAATCAGTTGACAATTTCATTTCAAGTCCTAACTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGAAGAGAACACTAGCCCAAATTCATTGTGGGAGCCTCTTTGGACATGA 378 0.3757 SPFFQELPESQRADAVNSMVYEASARIRDPVYGCAGTICHLQKQVNELQAQLAKSQAELINMQLQQSNLLSLICMEMKETPNESSPQESVDNFISSPNYSSDYQNNLNFFEENTSPNSLWEPLWT 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32240g00001 125 ProSiteProfiles LOB domain profile. 1 59 IPR004883 -
Trme32240g00001 125 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 86 - -
Trme32240g00001 125 Coils Coil 45 65 - -
Trme32240g00001 125 Pfam Lateral organ boundaries (LOB) domain 3 56 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32240g00001 Trme-Chr32240 1 378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32240g00001 3 125 AS2 family AT2G28500 58.394 4.64e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme32240g00001 LOB 2.2e-16 No_clan