Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32235g00001 GAGCAGAAGAACCATGCTGCATTTGAGATAAGGGTTCTTACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGTTGTTGTTGGCATCAAGTGATTCATCAGCACAAGAGAATTCTATTGCAGCCCTTTTGAACCTTTCAAAATACACCAAAAGTAGAAGTGAAATGGTTGAAAATTGGGGGTTAGAAATGATTGTTGGCGTCTTAAACAAAGGGATAAAGATTGAAGCAAAGCAACATGCTGCAGCAGTGTTGTTTTACCTTGCTTCAAATCCTGATCATGGAAACTTAATAGGTGAAGAGCCAGAAGCAATTCCCTCATTGATCAGTCTCATCAAAGATGGCACCGATCGAAGTGTAAAGAATGGTTTGGTTGCANNNNNNNNNNANCTAAAACACCATGAAAACCACAAGAGGATACTTGCTGCTCAAGCAATTCCTTTGTTAGTTAACATCTTGAAAGCATCTCAAAAAGAAGACCTTGTCACAGACACACTAGCAATTCTAGCAACACTTGCAGAGAAAAGTGACGGAACATCGGAAATCCTACGTTTCGGAGCTTTGCATGTAGCAGTTGAAGTTATGAGTTCTTCTTCCACAACTTCAAGATTAGGGAAAGAGCATTGTGTGTCATTGTTGCTTTCTCTATCAATAAATGGAGGAGAAAATGTGGTTGCTCATTTAGTGAAGAGTTCTTCACTTATGGAATCATTATATTCACAACTGAGTGAAGGAACTTGTAGAGCAAGCAAGAAAGCAAGTTCTCTCATAAGGGTCCTCCATGATTTTTATGAAAGGAGATCCTCTAACTACAAGGCATCAGTTATTCCACGAGAACAGTTTATTCATGTATGGTAA 885 0.3842 EQKNHAAFEIRVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENSIAALLNLSKYTKSRSEMVENWGLEMIVGVLNKGIKIEAKQHAAAVLFYLASNPDHGNLIGEEPEAIPSLISLIKDGTDRSVKNGLVAXXXXLKHHENHKRILAAQAIPLLVNILKASQKEDLVTDTLAILATLAEKSDGTSEILRFGALHVAVEVMSSSSTTSRLGKEHCVSLLLSLSINGGENVVAHLVKSSSLMESLYSQLSEGTCRASKKASSLIRVLHDFYERRSSNYKASVIPREQFIHVW 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32235g00001 294 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 28 70 IPR000225 GO:0005515
Trme32235g00001 294 PANTHER U BOX DOMAIN-CONTAINING 2 269 - -
Trme32235g00001 294 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 196 IPR000225 GO:0005515
Trme32235g00001 294 Gene3D - 1 110 IPR011989 -
Trme32235g00001 294 SUPERFAMILY ARM repeat 3 269 IPR016024 -
Trme32235g00001 294 Pfam Armadillo/beta-catenin-like repeat 21 56 IPR000225 GO:0005515
Trme32235g00001 294 SMART arm_5 16 57 IPR000225 GO:0005515
Trme32235g00001 294 SMART arm_5 142 183 IPR000225 GO:0005515
Trme32235g00001 294 SMART arm_5 58 99 IPR000225 GO:0005515
Trme32235g00001 294 Gene3D - 111 269 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32235g00001 Trme-Chr32235 1 885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32235g00001 6 294 U-box Gene Family AT1G10560 45.548 2.90e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32235g00001 - - gmx:100795816 389.808