Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32081g00001 ATGGAAAAGACAATTTTCATTTGTGTAGTAGTGCTTGTGGGGTTGTTCACCTCAGAACTAAGGGTGGCCTCAGCAATTTGGCAGCAAGCTCATGTAACTTTCTATGGTGGAAGTGATGCCTCGGGAACTATGGGGGGTGCATGTGGATACGGAAATTTATACACAGATGGTTATGGAATAAAAACAGCTGCTTTGAGTACTGCTTTATTTAATGATGGAAAATCATGTGGTGGTTGCTATCAGATTGTTTGTGATGCAAGTCAAGTTCCCCAATGGTGCCTCAGAGGAACTTCCATAACAATTACTGCCACTAATTTCTGTCCTCCAAACTTTGATCTCCCTAGTGACAATGGTGGTTGGTGTAATCCTCCTAGACCACATTTTGACATGTCCCAACCAGCTTTTCAAACGATCGCCAAATATAAAGCTGGAATTGTTCCAATCCTTTACAGAAA 455 0.4176 MEKTIFICVVVLVGLFTSELRVASAIWQQAHVTFYGGSDASGTMGGACGYGNLYTDGYGIKTAALSTALFNDGKSCGGCYQIVCDASQVPQWCLRGTSITITATNFCPPNFDLPSDNGGWCNPPRPHFDMSQPAFQTIAKYKAGIVPILYR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32081g00001 151 Gene3D - 15 151 IPR036908 -
Trme32081g00001 151 CDD DPBB_EXPA_N 27 151 - -
Trme32081g00001 151 FunFam Expansin 17 151 - -
Trme32081g00001 151 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Trme32081g00001 151 PRINTS Expansin/Lol pI family signature 143 151 IPR007118 GO:0005576
Trme32081g00001 151 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Trme32081g00001 151 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Trme32081g00001 151 Pfam Lytic transglycolase 62 150 IPR009009 -
Trme32081g00001 151 PANTHER EXPANSIN-A15 8 151 IPR002963 GO:0009664
Trme32081g00001 151 SMART dpbb_1 62 150 IPR007112 -
Trme32081g00001 151 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Trme32081g00001 151 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Trme32081g00001 151 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Trme32081g00001 151 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Trme32081g00001 151 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Trme32081g00001 151 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Trme32081g00001 151 SUPERFAMILY Barwin-like endoglucanases 20 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32081g00001 Trme-Chr32081 25 812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32081g00001 5 151 Expansin Gene Family AT4G01630 77.181 4.95e-84 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32081g00001 - - gmx:100783801 296.204