Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32074g00001 ATGGATGATGAGTATCAGAATTTTCTGGCTGAGTTGGGTGGTACGGTTCCTGAATCTGCAATAAAGCAAACTAGTACTTTGGCAATTGGGTCGGGCAATTCTGGAAGCAATCCACCTTGGGCTAACAATTCTAGTCCGGCTGGTAATACTCCAACACCTGGGTTAGGGGCTGGTGCAGGTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATCTGCCACCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCTAAAGTCATTAAGGATCGAATGACAGGATTGAGTAAAGGATATGGGTTTGTGAAATATGCTGATATCACAATGGCAAACAATGCAATTGTCGCCATGAATGGTTATCGCCTTGAGGGTCGAACCATTGCAGTGAGAGTAGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCCGGCCCACCAGCGTCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATACTGGCGGTGGTCCCCTTGGGAGTGCTCCTCCTGGGAGTTATGGCGGTACCCCAGTTCCGTGGGGACCTCCTATTCCTCCTCCATACAATCCTTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCTCCTATGCATGGTCAACCCATGCCTCCTTATGGTGTTCAATATCCTCCCATGCCAACAGGTCCCCCTGGTGCCACCTCCCAGCCAGCGGCTTCTGGTGAAATGCAGCAGAATTACCCTCCTGGAGTGCAGTCTGATAATAATACATCTACTCAGTCTCTACCAACCAACATGTATGGGAGCACAATATCTTCAATGCCACCTGCAGCTCCACCAACATATCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCTCCACCACCTCCCCCTCCTACTTCAGACCAATCCCACAGCATTGCTAATGCGCCTTGGGCCAGTAATCATTCGGTACCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCACCTATGCCTCCTCCTAACTCATCGGCGGAGAAGACATCATATGGA 1098 0.49 MDDEYQNFLAELGGTVPESAIKQTSTLAIGSGNSGSNPPWANNSSPAGNTPTPGLGAGAGKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPLGAYPSQQYTGGGPLGSAPPGSYGGTPVPWGPPIPPPYNPYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATSQPAASGEMQQNYPPGVQSDNNTSTQSLPTNMYGSTISSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPPTSDQSHSIANAPWASNHSVPPPPSSADQSQSIGNAPMPPPNSSAEKTSYG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32074g00001 366 MobiDBLite consensus disorder prediction 28 51 - -
Trme32074g00001 366 MobiDBLite consensus disorder prediction 231 366 - -
Trme32074g00001 366 PANTHER GEO13361P1-RELATED 65 263 - -
Trme32074g00001 366 MobiDBLite consensus disorder prediction 320 366 - -
Trme32074g00001 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Trme32074g00001 366 SUPERFAMILY RNA-binding domain, RBD 62 155 IPR035979 GO:0003676
Trme32074g00001 366 SMART rrm1_1 68 141 IPR000504 GO:0003723
Trme32074g00001 366 MobiDBLite consensus disorder prediction 288 319 - -
Trme32074g00001 366 MobiDBLite consensus disorder prediction 28 59 - -
Trme32074g00001 366 MobiDBLite consensus disorder prediction 245 287 - -
Trme32074g00001 366 Gene3D - 37 149 IPR012677 -
Trme32074g00001 366 FunFam splicing factor-like protein 1 47 149 - -
Trme32074g00001 366 MobiDBLite consensus disorder prediction 174 197 - -
Trme32074g00001 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32074g00001 Trme-Chr32074 1 1098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32074g00001 67 273 Eukaryotic Initiation Factors Gene Family AT3G16380 25.701 1.13e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32074g00001 K13095 - gmx:100800982 484.182