Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32065g00001 GAGGATGAGGAACGGAAGCTTCAGAGGAATCCTAACTACCCGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGGAAAACTTGCAATCATCCGTTGCTTAATTACCCATTCTTCAGTGACTTATCTAAAGAATTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACACCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAAATGACTTCAATGGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCCGGGAGAGGCCTTAACCTTCAGTCTGCTGATACAGTTGTTATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAGGCTGTTGCCAGAGCTCATCGCATTGGACAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCAAGTCATCAGAAGGAGGATGAAATGAGAGGTGGAGGCACTGTTGATCTGGATGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGGAATAATATTCAGCAATATAAGATAGATATGGCTGATGAGGTAATTAATGCTGGACGTTTCGATCAAAGAACAACGCATGAAGAAAGGCGGTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCATTGCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAACTGGATTGGATTGACGAGATGACACGTTACGATCACATCCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATGCTGCTATTGCTGCTTTATCAAAAAGACCATTAAAGAAAACTTTATTGGGTGGCAGTGCAGGCATGGAAACAAGTGAACTTGGTTCAGAAAGGAAAAGAGGGAGACCCAAAAAGCATACTAGTTATAAAGAGCTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGCTCTGAAGAA 1146 0.4101 EDEERKLQRNPNYPVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTVDLDDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRYDHIPKWIRANTKEVNAAIAALSKRPLKKTLLGGSAGMETSELGSERKRGRPKKHTSYKELEDEDLEYSEASSEE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32065g00001 382 MobiDBLite consensus disorder prediction 349 369 - -
Trme32065g00001 382 Pfam Helicase conserved C-terminal domain 57 169 IPR001650 -
Trme32065g00001 382 CDD SF2_C_SNF 46 179 - -
Trme32065g00001 382 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 59 236 IPR001650 -
Trme32065g00001 382 Coils Coil 275 295 - -
Trme32065g00001 382 MobiDBLite consensus disorder prediction 339 382 - -
Trme32065g00001 382 SMART helicmild6 85 169 IPR001650 -
Trme32065g00001 382 PANTHER SNF2/RAD54 HELICASE FAMILY 19 370 - -
Trme32065g00001 382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 300 IPR027417 -
Trme32065g00001 382 Gene3D - 3 185 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32065g00001 Trme-Chr32065 1 1146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32065g00001 70 177 RAD5 or RAD16-like Gene Family AT1G11100 43.119 1.60e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32065g00001 K11647 - gmx:100793092 682.559