Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme320478g00001 ATGGGTCGTCGTAAAATTGAGATTGAGATGGTGAAAGACTCAAACACGAGGCAAGTCACATTCTCAAAGCGTCGAACAGGTCTATTCAAAAAAGCAAATGAATTATCTATTTTGAGTGGAGCAGAAATAGCTATTGTCGTATTTTCTCCAGGGAATAAGCCATACTCTTTTGGTCACCCAGGAGTTCATGTTGTTGCGGTCAAGTATCTTCAACAAGATCCTGAATCAAGTGACTCTGAAGGAGACCCCTCTTCTGATGCTTCCAATATGGACGAGTTGAATCTGGAAC 289 0.4152 MGRRKIEIEMVKDSNTRQVTFSKRRTGLFKKANELSILSGAEIAIVVFSPGNKPYSFGHPGVHVVAVKYLQQDPESSDSEGDPSSDASNMDELNLE 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme320478g00001 96 MobiDBLite consensus disorder prediction 72 96 - -
Trme320478g00001 96 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trme320478g00001 96 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Trme320478g00001 96 MobiDBLite consensus disorder prediction 71 96 - -
Trme320478g00001 96 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme320478g00001 96 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme320478g00001 96 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme320478g00001 96 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme320478g00001 96 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Trme320478g00001 96 PANTHER MADS BOX PROTEIN 3 78 - -
Trme320478g00001 96 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Trme320478g00001 96 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme320478g00001 Trme-Chr320478 1 289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme320478g00001 1 80 Type I MADS-box Gene Family AT2G34440 62.195 1.82e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme320478g00001 SRF-TF 5.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme320478g00001 - - mtr:11439559 154.451