Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32028g00001 ATGGCTGACAAAACAATTGACGAGAAACACAGGCTAGGAACCGGTGCTTACGGCACGGTTTATGCAGGAAACCTTCACAATGATGAATTGGTTGCTATAAAAAAGATCAGGTATAGAGACACCAACAGTGTTGACCAAGTCATGAATGAGATTAAGCTCCTTTCTTCGGTTAGTCACCCGAATTTAGTTCGACTCTTAGGCTGCTGTATAGAAAAAGGAGAGCATATACTTGTTTATGAGTATATGGCAAATGGAACATTATCTCAACATTTACAAAGAGAAAGAGGTGGAACACTTCCTTGGACAATAAGACTCACCATTGCCTCTGAAACTGCTAATGCTATAGCATTTCTTCACTCTTCAAATCCTCCAATTTATCATAGAGACATAAAATCTAGTAACATACTTTTGGACTTTAGCTTTCAATCGAAAGTAGCAGATTTCGGACTTTCTAGGCTAGGCATGACAGAAACATCACATATCTCAACCGCGCCACAAGGGACACCGGGTTATGTTGATCCACAATACCACCAAAACTTTCACCTTTCNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGTAGACCTCAAAGTGAGATTAATTTAGCAGCACTTGCTGTTGAAAAAATTAGGAAAGGTCGTATCGACGATATCATAGATCCTTTCCTTGATCTAAATAGGGATGCTTGGACACTCTATTCTGTTAACAAGGTAGCTGAGCTTGCATTTAGATGCCTCGCTTTTCATAGCGAAGCGAGGCCTAGTATGATTGAAGTGGCTGAGGAGCTAGATCATAT 839 0.3671 MADKTIDEKHRLGTGAYGTVYAGNLHNDELVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEKGEHILVYEYMANGTLSQHLQRERGGTLPWTIRLTIASETANAIAFLHSSNPPIYHRDIKSSNILLDFSFQSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSXXXXXXXXXXXXXXXXXXXXXXXXXRPQSEINLAALAVEKIRKGRIDDIIDPFLDLNRDAWTLYSVNKVAELAFRCLAFHSEARPSMIEVAEELDH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32028g00001 279 Pfam Protein kinase domain 8 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32028g00001 279 ProSiteProfiles Protein kinase domain profile. 6 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32028g00001 279 Gene3D Transferase(Phosphotransferase) domain 1 204 279 - -
Trme32028g00001 279 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Trme32028g00001 279 Gene3D Transferase(Phosphotransferase) domain 1 1 185 - -
Trme32028g00001 279 SMART serkin_6 6 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32028g00001 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trme32028g00001 279 SUPERFAMILY Protein kinase-like (PK-like) 9 275 IPR011009 -
Trme32028g00001 279 Coils Coil 209 209 - -
Trme32028g00001 279 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 5 277 IPR044652 GO:0004672
Trme32028g00001 279 PIRSF ILK 3 181 - -
Trme32028g00001 279 PIRSF ILK 248 279 - -
Trme32028g00001 279 Coils Coil 182 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32028g00001 Trme-Chr32028 1 930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32028g00001 2 279 Receptor kinase-like Gene Family AT2G23450 68.817 1.91e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme32028g00001 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32028g00001 - - gmx:100810861 436.032