Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme32020g00001 ATGAAGTTGTCTTTTATAAAAGATGACAGAGAAAGATTTGATTTGCAAGAGTTGTTGAGAGCTAATGCTGAGATTTTGGGAAGTGGTTGTTATAGTTCTTCTTATAAGGCTTCTTTGACAAGTGGACCAACAATAGTTGTGAAGAGGTTTAAACAAATGAATAATGTAGGGAAGGAAGAGTTTCAAGAACATATGAGAAGGATAGGAAGATTGAATCATCAGAATTTGATTCCTCTTGTGGCTTACTATTATAGAAAAGAGGAAAAGCTTTTGGTTACTGACTATGTTCAAAATGGCAGTCTGGCTGTTCGCCTTCATGGACACCAACAACTAGGTGAACCAAGCCTTGATTGGCCAACAAGATTGAAGATTGTGAAAGGAATAGCAAAAGGTCTTGANTATCTATACAAAGATATGCCAAGCCTAATTGCACCTCATGGAAATCTAAAATCCTCAAATGTACTTCTAACACAAACATTTGAACCACTCCTCACAGATTATGGATTAGTCCCAGTTACAAACCAAGAAATGGCCAAGGACATAATG 546 0.3663 MKLSFIKDDRERFDLQELLRANAEILGSGCYSSSYKASLTSGPTIVVKRFKQMNNVGKEEFQEHMRRIGRLNHQNLIPLVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQQLGEPSLDWPTRLKIVKGIAKGLXYLYKDMPSLIAPHGNLKSSNVLLTQTFEPLLTDYGLVPVTNQEMAKDIM 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme32020g00001 182 SMART tyrkin_6 20 181 IPR020635 GO:0004713|GO:0006468
Trme32020g00001 182 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Trme32020g00001 182 ProSiteProfiles Protein kinase domain profile. 20 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme32020g00001 182 Gene3D Transferase(Phosphotransferase) domain 1 96 180 - -
Trme32020g00001 182 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 176 IPR046959 -
Trme32020g00001 182 FunFam pollen receptor-like kinase 1 1 95 - -
Trme32020g00001 182 Pfam Protein tyrosine and serine/threonine kinase 24 173 IPR001245 GO:0004672|GO:0006468
Trme32020g00001 182 SUPERFAMILY Protein kinase-like (PK-like) 24 176 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme32020g00001 Trme-Chr32020 129 1012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme32020g00001 2 179 Receptor kinase-like Gene Family AT5G35390 72.472 1.41e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme32020g00001 PK_Tyr_Ser-Thr 9.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme32020g00001 - - gmx:100790485 325.094