Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme319679g00001 AACAGAATAAATGGTTCTTCAGTTTACCGAGCAAGCTTGAAGGGTGATGATGCTGCAGTTAAGGTTCTCAAAGGTGATGCCTCTGCAGAGATCAACATTCAAGGGAGAATCAGCCACGCCAACATAACAAGGCTCTCTGGGTTTTGTGTACACAAAGGAAGCACATATCTTGTCTACGAGTTTGTTGAAAATGGTTCTCTTGATAATTGGATTCATTTTAACAATCGCTTAAATTTTGTGGCTCTGACTTGGAGGCAAAGAGTTCAGATTGTTCAGGATGTTGCTGATGCTTTGAATTACCTTCACAACTATGCCAACCCTTCACATATCCACAA 335 0.409 NRINGSSVYRASLKGDDAAVKVLKGDASAEINIQGRISHANITRLSGFCVHKGSTYLVYEFVENGSLDNWIHFNNRLNFVALTWRQRVQIVQDVADALNYLHNYANPSHIH 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme319679g00001 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme319679g00001 111 Pfam Protein tyrosine and serine/threonine kinase 18 103 IPR001245 GO:0004672|GO:0006468
Trme319679g00001 111 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 111 - -
Trme319679g00001 111 Gene3D Transferase(Phosphotransferase) domain 1 2 111 - -
Trme319679g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 6 111 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme319679g00001 Trme-Chr319679 1 335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme319679g00001 1 111 Receptor kinase-like Gene Family AT2G33580 58.036 1.39e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme319679g00001 PK_Tyr_Ser-Thr 1.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme319679g00001 - - tpra:123901277 228.024