LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme319573g00001	GGTTTAAGGGTTACAGTGAAACTTACTGTCCAGAATCGTCAGGCGAAGGTTTCGGTTGTTCCATCGGCGGCAGCGCTTGTTATCAAGGCTTTGAAAGAGCCTGAACGTGATCGGAAGAAGGTTAAGAATATCAAACACAATGGGAATATTTCACTTGATGATGTTATTGAAATTGCTAAGGTTATGAAACCTAGATCAATGGCGAAGGAACTTTCTGGAACTGTTAAGGAGATTCTTGGTACTTGTGTTTCTGTTGGTTGTACTGTTGATGGTAAAGATCCTAAGGATCTTCAACAGGAGATTGATGATGGAGATGTTGAAATTCCTCAGGATTAA	336	0.4048	GLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHNGNISLDDVIEIAKVMKPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVEIPQD	111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme319573g00001	111	SUPERFAMILY	Ribosomal protein L11, C-terminal domain	21	94	IPR036769	-
	Trme319573g00001	111	Pfam	Ribosomal protein L11, RNA binding domain	20	89	IPR020783	GO:0003735\|GO:0005840\|GO:0006412
	Trme319573g00001	111	Gene3D	-	22	109	IPR036769	-
	Trme319573g00001	111	FunFam	60S ribosomal protein L12	27	109	-	-
	Trme319573g00001	111	ProSitePatterns	Ribosomal protein L11 signature.	76	91	IPR020785	GO:0003735\|GO:0005840\|GO:0006412
	Trme319573g00001	111	CDD	Ribosomal_L11	1	89	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Trme319573g00001	111	PANTHER	60S RIBOSOMAL PROTEIN L12	1	96	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Trme319573g00001	111	SMART	rl11c	1	90	IPR000911	GO:0003735\|GO:0005840\|GO:0006412
	Trme319573g00001	111	MobiDBLite	consensus disorder prediction	89	111	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme319573g00001	Trme-Chr319573	1	336	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme319573g00001	1	111	Cytoplasmic Ribosomal Protein Gene Family	AT5G60670	89.189	2.58e-69	203

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme319573g00001	K02870		-	twl:119984749	213.001