Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme319240g00001 ATGCTCGTGGGTGATGGTATGGATGCAACCATAATCACAGGCCGCTTAAATGTCATTGATGGAACGGGAACCTTCCAAAGTGCAACTGTTGCTGCTGTTGGAGATGGTTTTATAGCTCAGGACATTGGGTTCCAAAACACTGCAGGCCCAGAAAAGCATCAGGCAGTTGCTCTCCGTGTCGGCTCTGATCAATCTGTCATCAACCGCTGCAAAATT 216 0.4815 MLVGDGMDATIITGRLNVIDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGSDQSVINRCKI 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme319240g00001 72 Gene3D - 1 72 IPR012334 -
Trme319240g00001 72 PANTHER PECTINESTERASE 1 72 - -
Trme319240g00001 72 SUPERFAMILY Pectin lyase-like 1 72 IPR011050 -
Trme319240g00001 72 Pfam Pectinesterase 1 72 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme319240g00001 Trme-Chr319240 1 303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme319240g00001 1 72 Carbohydrate Esterase AT1G11580 81.944 2.87e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme319240g00001 K01051 - msin:131239197 130.568