Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31922g00001 GATGATGGGACTGATCATGTGCATGTGGCTGGAGCTCGTGGTGCCACTGGTTTTGTATATCCTATCGTAAGTTCAAAATTTGACGAGTCAGGTCAGACACTTGTATGTGGCACATTGGATAGTCTCCGAGATAAAAAGATCCTTGGATTGAAGAGGATTGAACGGGTACTTCCAGTTGGAACTTCTTTGACTGTTGTTGGTCAGATTGCTAATGGTGCAAGATATTATAGGTTACTTGCTGGAACATAA 249 0.4257 DDGTDHVHVAGARGATGFVYPIVSSKFDESGQTLVCGTLDSLRDKKILGLKRIERVLPVGTSLTVVGQIANGARYYRLLAGT 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31922g00001 82 PANTHER - 1 70 IPR044231 GO:0004842|GO:0016567
Trme31922g00001 82 Pfam E3 Ubiquitin ligase 2 71 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31922g00001 Trme-Chr31922 268 708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31922g00001 1 68 C3H Transcription Factor Family AT1G63900 63.235 1.27e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31922g00001 K15688 - gmx:100800734 98.9821