Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3189g00001 TATTGCCACTGCAAGGATGAAAGGCGAGTTCCCAGAAAGGTTAGGGCAGCCAGAATGTCAGGCATGTACTTGTTTCTCAATGAGTGCATAAGGTGTTTACAGTCTAGTGACTTGGTTCCTTCCAAAATATCAAGTACATTTGATGCCTTCTTGAAGTACTATCTGAAAACGGGAACTTGCAAATTTGGAGCCACATGTAGGTTTCATCATCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGTCTGAATGTGCTTATTATTTAAGAACCGGTCAATGTAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAATAATATGGTACTTTCAATGAGGGGTTCCCCTGCTTATCCTACTGTCCAGTCTCCAACTACACCAGGACAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTAGTTCATCCTATATTCCCAGTCCGAGGTGGCAAGGCCCTTCAAGTTACGCACCCTTAATTCTACCTCAAGGAATGGTTTCAGTGCCTGGGTGGAGTACATACAATGTAAGCTGA 576 0.4375 YCHCKDERRVPRKVRAARMSGMYLFLNECIRCLQSSDLVPSKISSTFDAFLKYYLKTGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRGSPAYPTVQSPTTPGQQSYAAGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSTYNVS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3189g00001 191 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 72 IPR000571 GO:0046872
Trme3189g00001 191 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Trme3189g00001 191 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Trme3189g00001 191 SMART c3hfinal6 49 72 IPR000571 GO:0046872
Trme3189g00001 191 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Trme3189g00001 191 SUPERFAMILY CCCH zinc finger 53 74 IPR036855 GO:0046872
Trme3189g00001 191 ProSiteProfiles Zinc finger C3H1-type profile. 52 73 IPR000571 GO:0046872
Trme3189g00001 191 SUPERFAMILY CCCH zinc finger 92 119 IPR036855 GO:0046872
Trme3189g00001 191 Gene3D - 49 129 - -
Trme3189g00001 191 PANTHER PROTEIN PHOSPHATASE RELATED 51 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3189g00001 Trme-Chr3189 80 2033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3189g00001 52 189 C2H2 Transcription Factor Family AT3G02830 62.319 6.44e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme3189g00001 zf-CCCH 5.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3189g00001 - - gmx:100786261 286.189