Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3188g00001 ATGAATGCGGATCTTGAAGAGCTGAGAGAACTCGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGCGGGGATCAGATGTTGCAATTAAAAGAATAAAGAAAAGTTGTTTCTCCGGTCGGTCTTCAGAACAAGAAAGACTGACCATAGAGTTTTGGCGGGAAGCGGACATACTTTCCAAGCTTCATCATCCAAATGTGGTAGCATTTTATGGGGTAGTTCAAGATGGACCAGGAGGAACAATGGCCACTGTTACTGAGTTCATGGTCGATGGTTCTCTTCGGCATGTTTTGCTACGTAAGGATAGGTATCTTGATCGCCGCAAGAGGCTGATAATTGCCATGGACGCAGCTTTTGGAATGGAGTATTTACACGCAAAAAATATTGTTCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACATGAAGGATCCTTTACGGCCAATATGCAAGGTTGGCGATTTTGGCCTGTCAAAAATTAAGCGGAATACCCTGGTGACTGGTGGTGTGCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTGAATGGGAGCAGCAATAAGGTTTCAGAAAAGGTTGATGTATTCTCCTTTGGCATTGTATTATGGGAGATTCTTACTGGGGAGGAGCCATATGCTAATATGCACTATGGTGCAATCATAG 670 0.4388 MNADLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFSGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHAKNIVHFDLKCDNLLVNMKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAII 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3188g00001 223 CDD STKc_MAP3K-like 11 223 - -
Trme3188g00001 223 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Trme3188g00001 223 Pfam Protein tyrosine and serine/threonine kinase 6 218 IPR001245 GO:0004672|GO:0006468
Trme3188g00001 223 SMART serkin_6 5 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3188g00001 223 SUPERFAMILY Protein kinase-like (PK-like) 4 219 IPR011009 -
Trme3188g00001 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Trme3188g00001 223 PIRSF ILK 1 220 - -
Trme3188g00001 223 Gene3D Transferase(Phosphotransferase) domain 1 93 223 - -
Trme3188g00001 223 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Trme3188g00001 223 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1 92 - -
Trme3188g00001 223 PANTHER SERINE-THREONINE PROTEIN KINASE 3 217 - -
Trme3188g00001 223 ProSiteProfiles Protein kinase domain profile. 5 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3188g00001 Trme-Chr3188 70 1875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3188g00001 1 223 MAP Kinase Kinase Kinase AT1G16270 92.825 1.21e-149 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trme3188g00001 PK_Tyr_Ser-Thr 1.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3188g00001 - - mtr:120578222 444.891