Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31815g00001 ATGTCCTTTCCCGGCATGTCTCCGGCGATCAACCTGAACTCTCCGTCATCTTCCACCACTGATAGCGGCAGTAGGGAATCAACGTCAACAACTCTTCATTGTGACACTGAAAACACACGTTTAACGTTGCGTGAAACTCACACACTTCCTTGTTGGCGGAGGTACAAGGGAGTGAGGCGGAGGCCGTGGGGAAAGTTTGCGGCAGAAATTAGAGATCCAAATAAGAACGGCGCAAGGGTGTGGCTTGGAACATATCAGTCCGCTGAAGATGCGGCTTTGGCTTATGACCGAGCTGCGTTTAAATTGCGTGGCTCAAAGGCTAAGGTGAATTTTCCACATTTGATTGACTCCAATGTTTCGGAGCCGATTGGTACACGTCGTGCACAAGAGCCAACTCGGTTGGTTCCGGAGCCGAAAAAGAAAGCGAGCCGAGTTAGTGTCTATGATACTTTATTATGA 459 0.4924 MSFPGMSPAINLNSPSSSTTDSGSRESTSTTLHCDTENTRLTLRETHTLPCWRRYKGVRRRPWGKFAAEIRDPNKNGARVWLGTYQSAEDAALAYDRAAFKLRGSKAKVNFPHLIDSNVSEPIGTRRAQEPTRLVPEPKKKASRVSVYDTLL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31815g00001 152 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Trme31815g00001 152 FunFam Ethylene-responsive transcription factor 2 53 113 - -
Trme31815g00001 152 PRINTS Ethylene responsive element binding protein signature 94 114 IPR001471 GO:0003700|GO:0006355
Trme31815g00001 152 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Trme31815g00001 152 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Trme31815g00001 152 MobiDBLite consensus disorder prediction 1 33 - -
Trme31815g00001 152 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Trme31815g00001 152 PANTHER DNA-BINDING DOMAIN 28 127 IPR044808 GO:0003700|GO:0009873
Trme31815g00001 152 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Trme31815g00001 152 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Trme31815g00001 152 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31815g00001 Trme-Chr31815 194 652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31815g00001 54 138 AP2-EREBP Transcription Factor Family AT2G44840 72.941 6.57e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme31815g00001 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31815g00001 K09286 - qsa:O6P43_017200 132.494