Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3178g00001 ATGCAATTCAATGCAAAGTGTTGTCTAACTGCGGCTAAAGTGGTGGATAGATTTCCCTATGAAGGTTATGGAAAAAGAACTTCATTTGATGATTCAGTTAATGCCTCACTCTTTGATGGATCTCAATTCAATGTTTCTGATGAAGAATCAGTGCCGAATTTCTCTTATAATGAAGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAACTTTATATCCTCATCAACAAGAAGGCTTTGAGTTCATTTGGAAAAACTTGGCAGGATACATTCATCTTCACAAGTTGAAGAACGCCAATCCTCGCAGAGAGGGTGGCTGCATTATCTCCCATGCTCCTGGAACTGGAAAGACAAGGTTGACAATAGTGTTTCTCATGGCATATATGAAAGTGTTCCCGAAATGCTTTCCGGTTATTGTTGCTCCTGCGGGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATCTAAACAGTTCTGAGTTATCCGGTAAAGAGCACGATGATGCCGTTAATCTGTCTCATACACGGCAAAGTAAGGGCGAGATACGTATGGCGAAACTAATTTCGTGGTTCAAAGAAAAGAGCATTCTGGGAATCAGTTACGCTTTGTACAAGATCCTAGCCGGCGGAGGTGGGGAATCCAAAGATAAGAAAAAGAAAAAACATCATGCCGAAAAAACGAAAAAGAAAAAACATGCAGATGTGGAGAAGGGAAAAGAAAATGATGTTATGCGAAAGGTTCTACTCGAAGTTCCTCGTTTGTTAATTCTAGATGAAGGACACACACCGAGAAATCGAAAAAGTAATATTTGGAAGGTGTTATCGGAAGTTCAAGCGCGTAAGCGAATTATTCTTTCCGGAACTCCTTTTCAAAATAACTTGTTGGAACTTTACAACACATTTAGCTTAGTGAAGCCTTCTTTTCCTAACACAATACCTCGTGAGCTGAAAAAATTTTGCGAACGCAGAAATGCATCAAAAGAATGGAGTTGGGAAGCGGATTCTGGCAATAGTACAACAGGTAATCCTTCTGATGATAAGATCATGCAGTTGAAATTGCTTATGGATCCGTTTGTTCATGTGCACAAAGGAGC 1121 0.3996 MQFNAKCCLTAAKVVDRFPYEGYGKRTSFDDSVNASLFDGSQFNVSDEESVPNFSYNEGTVWDLIPGVKQTLYPHQQEGFEFIWKNLAGYIHLHKLKNANPRREGGCIISHAPGTGKTRLTIVFLMAYMKVFPKCFPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNSSELSGKEHDDAVNLSHTRQSKGEIRMAKLISWFKEKSILGISYALYKILAGGGGESKDKKKKKHHAEKTKKKKHADVEKGKENDVMRKVLLEVPRLLILDEGHTPRNRKSNIWKVLSEVQARKRIILSGTPFQNNLLELYNTFSLVKPSFPNTIPRELKKFCERRNASKEWSWEADSGNSTTGNPSDDKIMQLKLLMDPFVHVHKGA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3178g00001 374 SMART ultradead3 68 324 IPR014001 -
Trme3178g00001 374 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 16 373 IPR044567 GO:0080188
Trme3178g00001 374 Gene3D - 55 351 IPR038718 -
Trme3178g00001 374 Pfam SNF2-related domain 93 320 IPR000330 GO:0005524|GO:0140658
Trme3178g00001 374 MobiDBLite consensus disorder prediction 220 247 - -
Trme3178g00001 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 316 IPR014001 -
Trme3178g00001 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3178g00001 Trme-Chr3178 1 1766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3178g00001 264 314 RAD5 or RAD16-like Gene Family AT5G22750 41.176 5.67e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme3178g00001 SNF2_N 6.8e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3178g00001 K10875 - gmx:100812737 392.504