Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme317483g00001 GTGATCAATGAGACGCAGACATCATCATCACCACCGCCGATTGAAGAAAGTAACAAAATACCATTTATTGGAGTAAGAAGAAGGCCATGGGGGAAATTCGCGGCAGAGATAAGGGACTCAACAAGAAAAGGAGCTAGAGTATGGATTGGAACATTCAACACGGCCCAAGAAGCTGCTTTAGCTTATGATCAAGCTGCTTTTTCAACTAGAGGTTCATCGGCAGTGTTGAATTTTCCAGAAGAAATGGTTAGAGAATCACTCAAAGAAATGGCTAAAAATTCTAAGCCTTTGGAAGAAGGTACTTCTCCGGTGTTGGCAATCAAGAGCAAACACATC 336 0.4226 VINETQTSSSPPPIEESNKIPFIGVRRRPWGKFAAEIRDSTRKGARVWIGTFNTAQEAALAYDQAAFSTRGSSAVLNFPEEMVRESLKEMAKNSKPLEEGTSPVLAIKSKHI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme317483g00001 112 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Trme317483g00001 112 MobiDBLite consensus disorder prediction 91 112 - -
Trme317483g00001 112 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Trme317483g00001 112 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Trme317483g00001 112 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Trme317483g00001 112 FunFam Ethylene-responsive transcription factor 2 20 80 - -
Trme317483g00001 112 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Trme317483g00001 112 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Trme317483g00001 112 PANTHER DNA-BINDING DOMAIN 15 90 IPR044808 GO:0003700|GO:0009873
Trme317483g00001 112 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Trme317483g00001 112 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme317483g00001 Trme-Chr317483 3 338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme317483g00001 22 111 AP2-EREBP Transcription Factor Family AT2G31230 68.889 8.38e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme317483g00001 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme317483g00001 K14516 - gmx:100780775 155.221