Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme317304g00001 ATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAACAAGTTGCAAATGGCTATTTCATTGGTTGCATCTAATCGATGGATACTAACTGGAACCCCAACACCTAACACTCCTAACAGCCAACTTACACATCTACAACCATTGCTAAGGTTCCTTCACGAAGAAGCATATGGACTGAATCAAAAGTCATGGGATGCTGGCGTGCTTAGGCCATTTGAGGC 254 0.4291 MQVHWFRIILDEGHTLGSSLSLTNKLQMAISLVASNRWILTGTPTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEA 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme317304g00001 85 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 84 IPR027417 -
Trme317304g00001 85 Gene3D - 1 83 IPR038718 -
Trme317304g00001 85 Pfam SNF2-related domain 2 84 IPR000330 GO:0005524|GO:0140658
Trme317304g00001 85 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 85 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme317304g00001 3 84 RAD5 or RAD16-like Gene Family AT5G22750 46.341 1.91e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme317304g00001 SNF2_N 2.3e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme317304g00001 - - gmx:100803102 169.474