Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3169g00001 ATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTTCTTCGTCGAAAATGCATGCCAGGTTGCATTTTCGCACCATACTTTCCACCAGAAGAGCCACAAAAATTCGCAAACGTTCACAAGATCTTTGGCGCAAGCAACGTGACAAAGATCCTCAACGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCACTTGCTTATGAAGCAGAAGCGCGCGTGAGGGATCCGGTTTATGGCTGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTTCAAAAAGAACTTGATTCTGCTAATGCGGATCTTCTTCGCTTTGCTTACAATGATTCAACTCTTCCACCTCTTCCTCCTCTTGTTGTTCCGGCTTCATTTCATCATCATCATCAACAATTAACACCTCAGAGACAATTACAGTTTAGTTCAAGATTTGGTAATGGTGGTAATGTTGATGGAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATACCTCTTCTGATGATTTAAGTGGAGGTGTAGGAGGAAGAGGAGGAGGTGTAGGAGGAGGTAATTTGTGA 588 0.4303 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYNDSTLPPLPPLVVPASFHHHHQQLTPQRQLQFSSRFGNGGNVDGSGFYSFPYAIPWNDTSSDDLSGGVGGRGGGVGGGNL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3169g00001 195 Coils Coil 89 109 - -
Trme3169g00001 195 MobiDBLite consensus disorder prediction 176 195 - -
Trme3169g00001 195 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Trme3169g00001 195 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Trme3169g00001 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3169g00001 Trme-Chr3169 209 796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3169g00001 1 119 AS2 family AT5G63090 88.333 7.79e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme3169g00001 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3169g00001 - - gmx:100775922 273.478