Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31687g00001 GTGGAAGGAGGAAGAGTACGATTGTCCGAGGAAGCTAGAAATGGGTTAGAAGTGTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCCAACACTGCCACCCAGGCGAGTGTTGCTAACATGACGAATAGAAGTGGAGGAGATGCTTTGAGAGCTTCAGCTCCATGTGGTCCGAGATTGCATGGTAATCCGGATGTCTTTTTCAAGCGGAAGGTGGCTAAGTTTGATACAAGTGATTTGGAATGGACTGATAAAATTCCAGAGTGTCCCGTGTATTCTCCAACAAAGGAGGAATTTGAAGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATGGAGTTTGGCAATTGA 366 0.4426 VEGGRVRLSEEARNGLEVLKRKRLQRAQSNTATQASVANMTNRSGGDALRASAPCGPRLHGNPDVFFKRKVAKFDTSDLEWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGMEFGN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31687g00001 121 MobiDBLite consensus disorder prediction 25 46 - -
Trme31687g00001 121 MobiDBLite consensus disorder prediction 21 56 - -
Trme31687g00001 121 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 117 - -
Trme31687g00001 121 Pfam jmjN domain 89 117 IPR003349 -
Trme31687g00001 121 Gene3D Cupin 70 118 - -
Trme31687g00001 121 SMART JmjN_1 87 121 IPR003349 -
Trme31687g00001 121 ProSiteProfiles JmjN domain profile. 88 121 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31687g00001 Trme-Chr31687 693 1058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31687g00001 81 117 C2H2 Transcription Factor Family AT5G04240 45.946 1.20e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme31687g00001 JmjN 3.7e-11 CL0029