Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31554g00001 AAACATAGGATTTTGGTTTATGAGTATATGGAACATGGTTCTTTAGCTGAAAATCTATGTTCTAATTCACTTGATTGGAACAAGAGATTTAATGTAGCTGTTGGAACAGCTAAAGGTTTGGCTTATTTACATGAAGAGTGTTTGGAATGGGTTTTACATTGTGATGTGAAGCCTCATAATATTTTACTTGACACAAAATTTCAACCAAAAGTAGCTGATTTTGGATTATCAAAACTTTTGAATAGAGATGATCGCGATAGTTCTGTTTTTTCACGAATTCGAGGAACAAGAGGTTATATGGCACCTGAATGGGTTTATAATCTTAAAATTACTTCTAAAGTTGATGTTTATAGTTATGGAATTGTTTTGCTTGAAATGGTGAGTGGTAAAAGTCCAATGGAAATTCATAGTCTTGATAATAGTGGTGGTATAGAGCATCATAGAATGGTAACTTGGGTTATGGAAAAAGTGAAAAATGCTCCTACTACTATGTTTTGGATTGAGGAGATTGTTGATGGTAATTTGGAAGGAAAATATGATGTTAATCAAGTTGAGAATTTGGTTAAAGTTGCTTTGAAGTGTGTCAAAGATGATATGAATGAAAGACCTTCCATGAGTCAAGTAGTTGAGATGCTTCTTGAGTCCAATGAAAAAAGAGGCACCCCTCGTTAG 672 0.3363 KHRILVYEYMEHGSLAENLCSNSLDWNKRFNVAVGTAKGLAYLHEECLEWVLHCDVKPHNILLDTKFQPKVADFGLSKLLNRDDRDSSVFSRIRGTRGYMAPEWVYNLKITSKVDVYSYGIVLLEMVSGKSPMEIHSLDNSGGIEHHRMVTWVMEKVKNAPTTMFWIEEIVDGNLEGKYDVNQVENLVKVALKCVKDDMNERPSMSQVVEMLLESNEKRGTPR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31554g00001 223 PANTHER OS07G0415500 PROTEIN 1 214 - -
Trme31554g00001 223 SUPERFAMILY Protein kinase-like (PK-like) 2 213 IPR011009 -
Trme31554g00001 223 Gene3D Transferase(Phosphotransferase) domain 1 10 221 - -
Trme31554g00001 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Trme31554g00001 223 FunFam Serine/threonine-protein kinase 10 220 - -
Trme31554g00001 223 Pfam Protein kinase domain 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31554g00001 223 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31554g00001 223 SMART serkin_6 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31554g00001 223 PIRSF ILK 1 166 - -
Trme31554g00001 223 PIRSF ILK 174 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31554g00001 Trme-Chr31554 478 1149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31554g00001 1 212 Receptor kinase-like Gene Family AT1G60800 40.553 5.55e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme31554g00001 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31554g00001 - - gmx:100816469 362.459