Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31537g00001 ATGCATCACCTAACGGGTCAAGCAAATATTGTGGAACTAAAAGGTGCATATGAAGATAAACAATCTGTTCATTTGGTCATGGAATTGTGTGGCGGTGGCGAACTATTTGATCGAATTATTGCGAAGGGACTTTATACTGAACGTGCCGCGGCTTCATTGTTGAGGACGATTGTGCAAATTATTCATACTTTGCATTCAATGGGTGTTATTCATAGAGATCTTAAGCCTGAAAATTTCCTCTTGTTGAATAAGGATGAAAATGCACCACTTAAGGTCACCGATTTTGGTCTATCCGTCTTTTTCAAAGAAGGAGAAATGTTCAAAGACATTGTTGGTAGTGCATATTACATAGCACCAGAGGTGTTGAAGAGGAGATATGGGCAAGAAGTTGACATATGGAGTATTGGTGTCATGCTATACATTCTTCTTTCTGGTGTCCCTCCTTTTTGGGCAGGTTAA 459 0.3965 MHHLTGQANIVELKGAYEDKQSVHLVMELCGGGELFDRIIAKGLYTERAAASLLRTIVQIIHTLHSMGVIHRDLKPENFLLLNKDENAPLKVTDFGLSVFFKEGEMFKDIVGSAYYIAPEVLKRRYGQEVDIWSIGVMLYILLSGVPPFWAG 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31537g00001 152 Gene3D Transferase(Phosphotransferase) domain 1 35 152 - -
Trme31537g00001 152 SUPERFAMILY Protein kinase-like (PK-like) 4 151 IPR011009 -
Trme31537g00001 152 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Trme31537g00001 152 Pfam Protein kinase domain 4 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31537g00001 152 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 150 - -
Trme31537g00001 152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Trme31537g00001 152 SMART serkin_6 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme31537g00001 152 ProSiteProfiles Protein kinase domain profile. 1 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31537g00001 Trme-Chr31537 160 905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31537g00001 1 151 EF-hand Containing Proteins AT5G12180 89.404 4.39e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme31537g00001 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31537g00001 K13412 - egt:105958980 290.041