Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme315234g00001 AAAACCATCACCCTTGAGGTTGAGAGTTCTGATACCATAGACAACGTTAAAGCTAAGATCCAAGATAAGGAAGGGATTCCACCAGATCAGCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGTTGCGGTTAAGAGGTGGCATGCAGATATTTGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCAGATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAGCAGAGGCTTATCTTTGCAGGG 339 0.4543 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme315234g00001 113 PRINTS Ubiquitin signature 1 21 IPR019956 -
Trme315234g00001 113 PRINTS Ubiquitin signature 43 64 IPR019956 -
Trme315234g00001 113 PRINTS Ubiquitin signature 22 42 IPR019956 -
Trme315234g00001 113 ProSiteProfiles Ubiquitin domain profile. 1 66 IPR000626 GO:0005515
Trme315234g00001 113 Pfam Ubiquitin family 69 113 IPR000626 GO:0005515
Trme315234g00001 113 Pfam Ubiquitin family 1 64 IPR000626 GO:0005515
Trme315234g00001 113 SUPERFAMILY Ubiquitin-like 65 113 IPR029071 -
Trme315234g00001 113 FunFam Ubiquitin-60S ribosomal protein 1 67 - -
Trme315234g00001 113 SUPERFAMILY Ubiquitin-like 1 66 IPR029071 -
Trme315234g00001 113 SMART ubq_7 1 62 IPR000626 GO:0005515
Trme315234g00001 113 SMART ubq_7 67 113 IPR000626 GO:0005515
Trme315234g00001 113 PANTHER UBIQUITIN 67 113 - -
Trme315234g00001 113 FunFam Polyubiquitin-C 68 113 - -
Trme315234g00001 113 Gene3D - 67 113 - -
Trme315234g00001 113 ProSiteProfiles Ubiquitin domain profile. 67 113 IPR000626 GO:0005515
Trme315234g00001 113 ProSitePatterns Ubiquitin domain signature. 17 42 IPR019954 -
Trme315234g00001 113 Gene3D - 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme315234g00001 Trme-Chr315234 1 339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme315234g00001 1 67 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.507 2.12e-43 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme315234g00001 K08770 - cit:102612878 221.476