Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme315162g00001 ACCGGTGGTGGTTCCGACGACGAGAATGAGACTGAGGAAGACGTGAAATTGACTGGAGAAGACTCAAAGAAGAGTCATCAGAGAATTTTCAGAGAAGAAGACGAGCTTACTATTCTCAAAGGACTCGCTGATTTCATTTCCAAAACTAAAAAGGATCCGTTGAAGGACGCATCCGCATTTCACAGTTTCGTGAAGAAATCGCTTCGTGCTGAAGCTAACAGCGAACAACTGAAGCGGAAGGTTCGTACTTTGAAGAAGAAGTTTGAAACCAGTGACAGTTTCACTAAGCCCCATGATAAGAAAGCATTTGAGCTTTTCAAGAAG 324 0.4321 TGGGSDDENETEEDVKLTGEDSKKSHQRIFREEDELTILKGLADFISKTKKDPLKDASAFHSFVKKSLRAEANSEQLKRKVRTLKKKFETSDSFTKPHDKKAFELFKK 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme315162g00001 108 Coils Coil 67 87 - -
Trme315162g00001 108 MobiDBLite consensus disorder prediction 1 26 - -
Trme315162g00001 108 MobiDBLite consensus disorder prediction 1 15 - -
Trme315162g00001 108 Pfam Protein of unknown function, DUF573 27 108 IPR007592 GO:0006355
Trme315162g00001 108 PANTHER BNAANNG10740D PROTEIN-RELATED 9 108 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme315162g00001 Trme-Chr315162 16 339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme315162g00001 12 107 GeBP Transcription Factor Family AT1G61730 43.564 1.03e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trme315162g00001 DUF573 3.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme315162g00001 - - mtr:11424230 174.481