Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme315153g00001 ATGATGAAGATAACCGAGAAAAGTGATGTATACAGCTACGGCATAGTTGTATTAGAAGTACTAACAGGTAAACAACCAATTGATCCAACAATACCAGATGGACTTCACATTGTTGATTGGGTTAGACAGAAAAGAGGAGGAGTTGAAGTGCTAGATGAAAACTTAAGAGCAAGACCAGAATCCGAAATCGAAGAAATGTTGCAGACATTAGGTGTTGCATTGTTATGTGTAACTTCAAGCCCTGATGATAGACCAACAATGAAAGATGTTGTTGCAATGATGAAAGAGATTAAACAAGAAA 301 0.3688 MMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDENLRARPESEIEEMLQTLGVALLCVTSSPDDRPTMKDVVAMMKEIKQE 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme315153g00001 100 ProSiteProfiles Protein kinase domain profile. 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme315153g00001 100 Pfam Protein tyrosine and serine/threonine kinase 3 93 IPR001245 GO:0004672|GO:0006468
Trme315153g00001 100 Gene3D Transferase(Phosphotransferase) domain 1 1 100 - -
Trme315153g00001 100 SUPERFAMILY Protein kinase-like (PK-like) 3 93 IPR011009 -
Trme315153g00001 100 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme315153g00001 Trme-Chr315153 1 301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme315153g00001 1 99 Receptor kinase-like Gene Family AT5G56040 58.252 3.41e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme315153g00001 PK_Tyr_Ser-Thr 7.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme315153g00001 - - gmx:100794698 195.282