Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3143g00001 ATGCATGACATTATACAAGAAACCGCTTGGGATATTGTACGACGAGAATCTGTTGAAGAACCTGGAAGCCGAAGCCGACTATTTGAGCCTGATGACATTTATCATGTATTGAAAGATGACAAGGGAAGTGAGGCCATCAGAAGTATGGCCATTAGATTATCTGAAATTAAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCCAAGATGAGCAAGTTGAAATTTTTGGATATTTACACTAAGGGGTCTCCAAATGAAGGTAGTTTGTCTCTTCCTGGAGGGCTTGAATTCTTGCCTAATGAACTGAGATATCTTCGTTGGGAGTATTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTGCAGAAAACCTTGTTACATTGAGATTGCCTTATAGCCGATTAAAAAAAATTTGGGATGGAGTGAAGGATCTTGTGAATTTGAATGTCCTGATACTCCATTCATCCACACTCCTARCAGAGCTACCAGACTTTTCCAAGGCCACAAGTCTTGCAGTAATGGACCTCCAATTCTGTCCAGGGTTGACTAGTGTCCATCCATCTATTTTYTCTCTCAAAAATCTTAAGAAACTGGATCTGAGTGGATGCATTTCCCTTACAAGACTTCAAATCAATAATACCCATTTAAGTTCCCTTAGTCATCTCTCCCTCTACAACTGCACATCACTGAAGGAATTCTCAGTGACCTCGAAGAATATGAATGAACTGAATTTAAAACTCACAAGTATCAAAGAACTACCCTCATCAATTGGACTTCAAACCAAACTTGAAAAGTTACATCTAGGACACACACACATTGAGAGCTTGCCTAAGAGCATCAAGAATCTTACAAGGTTGAAACAATTAGGCTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNCTCTATCGCTAGAAATACTAGATGCTATTGGTTGTGTATCACTAGAGAATGTAGTGTTCGGTTCAACTGCTAGTGAACAACTTAAGGAAAAGAGGAAAAGGGTTATCTTCTGGAATTGCCTTAAACTAAATGAACCTTCTCTCAAGGCTATTGGGTTGAATGCTCAAATTAACATGATGAGCTTTTCACACAAACACATATCCACATGCGATCATAATCGTGATAGTCATCATGATCATGATCACAATCTTAATCAACGCATGTACGTGTACCCAGGTAGCAAAATTCCAGAGTGGTTGGAATATAGTACAACTACACATGATTTCATAACTATTGATCTTTCTTCTGCTCCTTATTTCTCTAGGTTAGGCTTCATTTTTGGCTTCATCATTCCAACCATCTCATCAGAGGGTTCAATTCTTAAATTCAAAATTAGTGATTGTGATGGCTTCATCATTCCAACCATCTNATCAGAGGGTTCAATTCTTAAATTCAAAATCAGTGACTGTGATGGTGAAGATGAAGGTATTAAAGTGTACTTGAACAGACCACATCACGGAATTGAATCGAATCATGTGTATCTAATGTATGACCCAAGATTGTCTCATTACCTAGCTAGCCGAGTCAATGATTGGTCAATGATTAAAATTCAGGTTAGAGCATCATCAAGAACACCAACATCACAGTACGTGCCAGTGCAGTTAAGAGGGTTTGGGGTTAGCC 1627 0.3792 MHDIIQETAWDIVRRESVEEPGSRSRLFEPDDIYHVLKDDKGSEAIRSMAIRLSEIKELQLSPQVFAKMSKLKFLDIYTKGSPNEGSLSLPGGLEFLPNELRYLRWEYYPLESLPSKFSAENLVTLRLPYSRLKKIWDGVKDLVNLNVLILHSSTLLXELPDFSKATSLAVMDLQFCPGLTSVHPSIFSLKNLKKLDLSGCISLTRLQINNTHLSSLSHLSLYNCTSLKEFSVTSKNMNELNLKLTSIKELPSSIGLQTKLEKLHLGHTHIESLPKSIKNLTRLKQLGXXXXXXXXXXXXXXLSLEILDAIGCVSLENVVFGSTASEQLKEKRKRVIFWNCLKLNEPSLKAIGLNAQINMMSFSHKHISTCDHNRDSHHDHDHNLNQRMYVYPGSKIPEWLEYSTTTHDFITIDLSSAPYFSRLGFIFGFIIPTISSEGSILKFKISDCDGFIIPTIXSEGSILKFKISDCDGEDEGIKVYLNRPHHGIESNHVYLMYDPRLSHYLASRVNDWSMIKIQVRASSRTPTSQYVPVQLRGFGVS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3143g00001 542 Gene3D Ribonuclease Inhibitor 237 329 IPR032675 -
Trme3143g00001 542 Gene3D Ribonuclease Inhibitor 37 236 IPR032675 -
Trme3143g00001 542 SUPERFAMILY L domain-like 51 384 - -
Trme3143g00001 542 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 232 IPR044974 GO:0006952
Trme3143g00001 542 Pfam Leucine Rich Repeat 122 141 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3143g00001 Trme-Chr3143 281 2466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3143g00001 1 317 WRKY Transcription Factor Family AT4G12020 39.264 9.06e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3143g00001 - - tpra:123883104 982.245