Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3142g00001 ATGGTTCAAAAGTATTGTCCATATCAAATTCATGAATTCATAAAAAAAATCTCAAACAAATTAGCCAGCTTGTTTGACCCTTATGTTGAGATTAGATTCTTTGAGTACATTGGTGATTTCAAGAAAACCAATGAAGCTTTCTCTKWCATTGATCACTACTTAACATCCAAATCCACCAATCAATCAAAGAAACTCCAAGGTGAATTTGTGAAAAATTCTTTAGTTCTAAAGACAGATGAAAGAGAAGAGTTTCATGATGAATTTGAAGGCATTAAGGTTGTTTGGAGTCTAAGAAAAATAGTCTCCAATAAAAAATCTGTTTCGTTCCGTCCTCCTAAGGACAAAAGATATTACATTCTCATGTTTCATTGCGGACATCGTGATTTTGTTACAAAATCTTACCTTAACTATGTTTTGGAACAAGGTAAGAACATTGGTTTAAGTAAGAGGCAAAGAAGACTTTACACAAATTGCAACGCTAAATGGAGTCATGTGATTTTTGAACATCCAGCTTCTTTTGAAACAATTGCAATGGATCCAAAAAATAAGAGAGAGATTGTTGATGATCTTATTAGATTCAGTAAGTCCAAAAATTATTATGCAAGAATTGGTAAGCCTTGGAAGAGGGGCTATTTGCTATATGGTCCTCCAGGAACAGGAAAATCATCATTAGTAGCTGCTATTGCAAATTTTTTGAAGTATGATATATATGACATTGAGTTAACTAATGTGAAAACAAATGCTGAGTTAAGGAAACTTTTGATTGGAATTACGAGTAAGTCGGTTGTTGTTATTGAAGATATTGATTGTTCGCTTGATCTTACCGGTCAGAGGAAGACAAATTTGGAGGATGGTAAAGAAAAAGAGGAGAAAAAGGAGATGAATCAAGTTGTTGCTTCTCTGCATGAGTTAAAATTAGAAGCTGCAACAGAGAACAAAAAAATTAGTCAGGTAACACTTTCTGGATTGTTGAATTTCATTGATGGGATTTGGTCAGCTAGTACTGGTGAGAGATTGATTATATTTACTACTAACTATGTGGAGAAACTTGATCATGCTCTAATTCGTCGAGGACGAATGGATATGCATATTGAATTGTCTTATTGTGGTTTTGATGGATTCAAAATGTTGGCAATGAATTATCTGAGTCTTGAATCTCATTTTTTGTTCGAGACGATTCGGTCTTTGTTGGAAGAGACTAATGTGACACCAGCTGATGTTGCCGAAAACTTGATGCCTAAGGTAGCTAATGAAGATGTTGAGACCTCATTGGAGAGGTTGATCCAAGCACTTAGAAGCTCTAAGGAAGAGGCAGAGAAAAAAGAAGGGCTAGTGGAGAGGATACATCAAAGGAGGAGGTAG 1362 0.351 MVQKYCPYQIHEFIKKISNKLASLFDPYVEIRFFEYIGDFKKTNEAFSXIDHYLTSKSTNQSKKLQGEFVKNSLVLKTDEREEFHDEFEGIKVVWSLRKIVSNKKSVSFRPPKDKRYYILMFHCGHRDFVTKSYLNYVLEQGKNIGLSKRQRRLYTNCNAKWSHVIFEHPASFETIAMDPKNKREIVDDLIRFSKSKNYYARIGKPWKRGYLLYGPPGTGKSSLVAAIANFLKYDIYDIELTNVKTNAELRKLLIGITSKSVVVIEDIDCSLDLTGQRKTNLEDGKEKEEKKEMNQVVASLHELKLEAATENKKISQVTLSGLLNFIDGIWSASTGERLIIFTTNYVEKLDHALIRRGRMDMHIELSYCGFDGFKMLAMNYLSLESHFLFETIRSLLEETNVTPADVAENLMPKVANEDVETSLERLIQALRSSKEEAEKKEGLVERIHQRRR 453
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trme3142g00001 453 SMART AAA_5 207 370 IPR003593 GO:0016887
Trme3142g00001 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 414 IPR027417 -
Trme3142g00001 453 Pfam Domain associated at C-terminal with AAA 7 97 IPR025753 -
Trme3142g00001 453 Pfam ATPase family associated with various cellular activities (AAA) 212 367 IPR003959 GO:0005524|GO:0016887
Trme3142g00001 453 ProSitePatterns AAA-protein family signature. 338 357 IPR003960 GO:0005524|GO:0016887
Trme3142g00001 453 Gene3D - 365 445 - -
Trme3142g00001 453 Coils Coil 417 444 - -
Trme3142g00001 453 PANTHER BCS1 AAA-TYPE ATPASE 2 438 - -
Trme3142g00001 453 Gene3D - 161 364 IPR027417 -
Trme3142g00001 453 CDD RecA-like_BCS1 186 366 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trme3142g00001 Trme-Chr3142 1049 2410 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3142g00001 186 366 Calmodulin-binding Proteins AT3G56690 27.513 6.74e-08 53.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3142g00001 - K08900 rvl:131304742 507.294