Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31396g00001 ATGTTTGCAAGAATTTGGCCTTGGCATGGAAATGTACTGGACCTGGAGCCATCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGATCAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATCCATACAATACTGGACTCCATCCTAACCATCTTCCACATCCTGGCTATGGTAACTTTTCTGGAAATCTTTATGGCTCAGTTGGGGCTGGATATGGTGTT 423 0.4232 MFARIWPWHGNVLDLEPSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYPYNTGLHPNHLPHPGYGNFSGNLYGSVGAGYGV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31396g00001 141 Gene3D - 14 132 IPR012677 -
Trme31396g00001 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Trme31396g00001 141 SUPERFAMILY RNA-binding domain, RBD 6 114 IPR035979 GO:0003676
Trme31396g00001 141 PANTHER OS02G0815200 PROTEIN 17 131 - -
Trme31396g00001 141 SMART rrm1_1 22 94 IPR000504 GO:0003723
Trme31396g00001 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31396g00001 Trme-Chr31396 1 840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31396g00001 23 105 Eukaryotic Initiation Factors Gene Family AT1G22760 26.506 6.20e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31396g00001 K13161 - gmx:100800974 240.736