Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme31393g00001 ATGATGAATGAAGCACATGAAGACATGAAAATGCTTGTTCAAGGTCAACAAATGTTAGATTTTTCAGTTCCAAAAGATTTTGCAAACAACTATTTAGCTAGAAATAATGGAGTGCATTTCGACAATGATGTGAAAATGGTAGATGATATGTTCATCGATATATCTCGTTCCGAAGAAGGTAGCGATATAAGCACCTTGCCAGAAAATTTGGTCCATGATGAGGATATTCGACAACTTCTTTTAGAAGAANNNNNNAAAGAAATGTCTCATGCATCAAGAGGAAAAACCTCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAAGTAAAAGGTAGTGAATATCCAAGAAGCTACTATAAATGTACTCAGTCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCGCACGACGGCCAAATAACAGAAATTATTTACAGGGGACATCACAACCATGCAATACCAAATTCTAGTCGTCGAGGATCAGTACCTTCAAATGATGAAATGTCTGATATTTCTGAAACCAATGAAACATGCAATAGAGCTGATGCTGATTCAATATGGGGAAATATTCAATCGCGAGAAAAAGATGCAAAACATCATTCGGACTGGAAGCTTGATGGTCAAGAAAGGACATCTCCGCCTTCTTCTAGGACCGAGCTTTCAAATCCTACAAAGAGATTTAGATCTCTAGGTATGTATGAATCAGACGAAGCTCGAGAGCATTATTCCACACTTGCTAATCACAATGGTGATAAAGGTGGAGCCACTCAAGCAGTTTTACGACTTGAAGATGATGTTGAAGATGCTGAATCAAAATTAAAAAGAAG 833 0.3661 MMNEAHEDMKMLVQGQQMLDFSVPKDFANNYLARNNGVHFDNDVKMVDDMFIDISRSEEGSDISTLPENLVHDEDIRQLLLEEXXKEMSHASRGKTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQSNCQVKKKVERSHDGQITEIIYRGHHNHAIPNSSRRGSVPSNDEMSDISETNETCNRADADSIWGNIQSREKDAKHHSDWKLDGQERTSPPSSRTELSNPTKRFRSLGMYESDEAREHYSTLANHNGDKGGATQAVLRLEDDVEDAESKLKR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme31393g00001 277 SMART WRKY_cls 97 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme31393g00001 277 FunFam WRKY transcription factor 86 157 - -
Trme31393g00001 277 Pfam WRKY DNA -binding domain 98 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme31393g00001 277 ProSiteProfiles WRKY domain profile. 92 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme31393g00001 277 MobiDBLite consensus disorder prediction 156 188 - -
Trme31393g00001 277 Gene3D WRKY domain 83 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme31393g00001 277 MobiDBLite consensus disorder prediction 210 227 - -
Trme31393g00001 277 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 91 243 IPR044810 GO:0003700
Trme31393g00001 277 MobiDBLite consensus disorder prediction 146 277 - -
Trme31393g00001 277 MobiDBLite consensus disorder prediction 232 248 - -
Trme31393g00001 277 Coils Coil 261 277 - -
Trme31393g00001 277 MobiDBLite consensus disorder prediction 191 209 - -
Trme31393g00001 277 SUPERFAMILY WRKY DNA-binding domain 94 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme31393g00001 277 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme31393g00001 Trme-Chr31393 28 860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme31393g00001 95 162 WRKY Transcription Factor Family AT1G13960 73.529 6.62e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme31393g00001 WRKY 4.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme31393g00001 K18835 - gmx:100813723 256.144